G85763 (LOC105929187)


Basic Information

Item Value
gene id G85763
gene name LOC105929187
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16586317 ~ 16589411 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU107047
CTGCTTCATGTGGTCGTTGAGGGCGATGCGCATCCCGTTTTTGAGGCTCAGCATCTCGCAGGACATCAGGGTGTAGAACACGCCGGTGCATGCCAGCGGGAGGCAGAAGTAAAAGCCAAACAGCCACCAGTCCTTCACATCCCGGTAGAACTGCAAGGGGAGAGATGGGCAGTGGAGGGAGTTAGGGGTCACTTATACTGCCACACCCTTGCACCCTCGAATCAATGGATTCTGAATCCCTATCCCAGCCAGGACATTGCCTGCCTCTGTGTGGTCTGGTCTCTGAAACAGAAGGACATGGTTGGGCAGGTGTGGGAGAAGGTCATGTGAACTCCAGCACATGGTGATTTGTGTGACGCAGACAGGCAGTGATGGAGAACTGAGACTGACCTCAGCAAGAGGCACATTTACTGGGAAGCAACAGTATtctgactttttatttattttaattatctattGAGCGAGCGTCTATTCACGCCAATGGGAACGAGAAACATTCAGTGACAATAACTTTTGTGTTCTCTGTGACTAAACTCTGAAGGAATTCTGCATAGAATTCGGCCAAGTTGGAAGGGGTTTATTTACATGCATCTGGCCAGAAAGCCACCCTTTCATGATCTGATTATTTGGGGGAGTCCAGATAGAGGGGATCTCACAATGGCTTGACTGCAGCcagccacagcagcagcactcTCAGAGGACATAgcaggagagcgagagagaggctCTGTAGAAGAGCTTGGTGATTTAAAACACCCTTTAAGGATGTTCTGCCTTCTCAACATCTCTGCCTTTCTGTAGCTGATTGcattacaaaaagtaaataacCAGATCTCTATCATATATTCAATATCATTGGTATGCGGAATAAACATAGTCCACTGATTGAGGGCTATAACATGGTCAGACTCTACAAAGGATACCCAGCACATAAGGAAAGGGTTGTTTCCTGCTgtttataattacaaaattgTGTCTCAGGTATTCTGGGCTGCTATCCCCCATGGTCCTGTAGGAATGAGTGCTGGTGCACTCTTGATTCCCCGACATCAGTCCGCGGTCTTTACTTAGCGGCTCTCTGTCATCACCACTGCactatatttctgttttactcTGTAATTTGCAGCCCCCTGGAATGCCTGGGAACAGCTCTGGAGTTCTCTAATGCGCTCCTTCCAGGTGACCCGAACAGGAGTTGAACCTTGTTATTACATATTATTgaccacaacaaaaacagctcaGTATCACTCGAGATCATTAAAACGAAGAAAAAACTTGTATACATTCATGAGCTGTGCTGACGTATATGGGACATTGCTATCaataaggtgtttttttgtttttggcgTGTTGACAAAGCTTGACAGCTGCTCGTCTGGATGCGGTATTGGATCCCTGGTCATCTGTAATTGAAACCCAAACAACAGCGCAGTCTGAAATGGCTCTGTTGGGAAGCATTTAATGCGTTTAAATGCAGCTGCTCTTCCGTGGTTTACACTGCAGCTCGCTCAGGCTGGCGGTGGCAGCATCCACCGGGGGGAACCGCTTCGTCGCGCCTCaagccaaaaataaacaaatcacacagTATTAAGCTGCTGGTTTGAAGAATAGGCAGTGTTCAAGGAAGGTGGTGGGGGCGATATTGAGTGGTCATGCACCCCTTGATTTTTTATAACAAGGTAACAAATACCCAAAGACATGAGTGGAAATCAAAAGCTTGGGAACTGGGTTAGgggttgtgtgtatgtgtgtgtgtgtgggatcaGAGGTCAGAGATCGGTTGGACTTTCTGATGTACCATCATAAACTGGGAGCTCTGCTGGGGGTGCAGTAGGCACACGCGGAGCTTGCTGCCCCTGTAGGGCGTCTCCATCATGTCAAAGGCAATGGCCTCGGGCACGGCCAGCACCACGGCCGCCACCCAGATCAGTGTCACCTCCACTGCCTTCCACAGCGGGATCCCCATCCCCTTCACCCGGCTCCACGACGTCACTGCATGGTACCTGCAGGGGGCGGCAGAGAAAGTCAGGTTAAGAGAGGAG

Function

NR:

description
endothelin B receptor-like precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107047 True 2042 lncRNA 0.49 2 16586317 16589411

Neighbor

gene id symbol gene type direction distance location
AMCG00021403 NA coding upstream 6773 16573928 ~ 16579544 (+)
AMCG00021401 NA coding upstream 24541 16556598 ~ 16561776 (+)
AMCG00021399 nup62,LOC100135786,LOC106603332 coding upstream 30672 16550033 ~ 16555645 (+)
AMCG00021400 cnga2,LOC103395327 coding upstream 40818 16541957 ~ 16545499 (+)
AMCG00021402 NA coding upstream 50501 16531948 ~ 16535816 (+)
AMCG00021407 LOC105927798,LOC100704732,LOC103366304,LOC102229095,LOC107386560,LOC101162152,LOC101061287 coding downstream 46944 16636355 ~ 16642487 (+)
AMCG00021408 NA coding downstream 64029 16653440 ~ 16655886 (+)
AMCG00021415 NA coding downstream 165522 16754933 ~ 16756372 (+)
AMCG00021416 NA coding downstream 189171 16778582 ~ 16790852 (+)
AMCG00021417 NA coding downstream 208247 16797658 ~ 16806805 (+)
G85760 NA non-coding upstream 1552 16584317 ~ 16584765 (+)
G85758 NA non-coding upstream 13449 16572193 ~ 16572868 (+)
G85757 NA non-coding upstream 16667 16569447 ~ 16569650 (+)
G85746 NA non-coding upstream 36972 16547657 ~ 16549345 (+)
G85674 NA non-coding upstream 294124 16289749 ~ 16292193 (+)
G85766 NA non-coding downstream 6790 16596201 ~ 16596902 (+)
G85784 NA non-coding downstream 57728 16647139 ~ 16649848 (+)
G85823 NA non-coding downstream 218395 16807806 ~ 16809314 (+)
G85876 NA non-coding downstream 447161 17036572 ~ 17042575 (+)
G85903 NA non-coding downstream 497341 17086752 ~ 17087794 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other upstream 512696 16063499 ~ 16073621 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other upstream 1153953 15428477 ~ 15432364 (+)
AMCG00021292 NA other upstream 2513192 14069330 ~ 14073125 (+)
AMCG00021296 NA other upstream 2552760 14016133 ~ 14033557 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 3148909 13435307 ~ 13437408 (+)
G85764 LOC103366846,LOC106930986 other downstream 770 16590181 ~ 16592973 (+)
G85787 NA other downstream 67233 16656644 ~ 16714038 (+)
G85869 NA other downstream 408466 16997877 ~ 17004131 (+)
AMCG00021441 NA other downstream 880914 17470325 ~ 17473396 (+)
G86121 NA other downstream 1659079 18248490 ~ 18249686 (+)

Expression


Co-expression Network