AMCG00021416


Basic Information

Item Value
gene id AMCG00021416
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16778582 ~ 16790852 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021416
CAcaaccccctctccctctggCTAACCAATGACAGGCATATCCTACACCGacgaccccccacccccagccccgGCGCTGGACGCGTTATTGTCCCGTTTCCTGGGGCAGACAGGAATCACAGACGCACTCGCCCTCACGCCAGCAGGAGCCCACAGTGTCCCGCTTTGCAAAGTCGCAGCTCGGCTCCGTGGTGCACAGACTGGCACCTTGACCGGCTGGCGAGCCGGGGTGGACACCACGCGTGTTTCCTTGCTCGGGGCTCGGGCGGGTCGTGTCTGTGTCGGTTCTCCCGGTGCCGTGCAGCCCGCAGCTTGCTGCTGTGAAGTGGGTGGTCAAATTGACGGCTTTCACTGTCTCACGGCACCGTCCCTGACAGCTACCGGCCCCGGGAGACACAGGTCGGCAGTTAAACGGGAAGGTCCGGTCCGGTGCAGCGGCGAGgACACAGACGTCAGGCAGGCTTTACAGGACAGCCCAGGATACAGCGGCTGAGGAGAGGTGTGGCCTTGCATGGTTTCCAGGCCAGGGAAGAGACTgacagagaccgagagagacGGGGGTGGTGGTGGTTAAGGTCTTTTTTGGCTGTGTGCAGATGATGGGCAGGCAGTGGCAGCTTTGGCTGCTCCATTGCTGACTGCAGGGCCATCCTGTAAGGGCCCTCCTTCGCAGCAGCTAAGATGTCGAGCCTCGGCCTCAACGAGAGCACTGAGGACTGCGCCATAGACGACTCCTTCAAGTACAACCTATACGGGGCGGTGTACAGCGTGGTTTTCGTGCTGGGCCTCATCACCAACTGTGCCTCGCTCTTTGTCTTCTGCTTCCGCATGAAGCTGCGCAATGAGACCACGCTGTTCATGACCAACCTGGCTGTGTCGGACCTGCTGTTCGTCTTCACGCTGCCCTTCAAGATCTTCTACAACCTGAACCGGGACTGGCCCTTTGGCGACGGACTGTGCAAGGTGTCGGGCACGGCCTTCCTCACCAACATCTATGGCAGCATGCTGTTCCTCACCTGCATCAGTGTGGACCGCTTTCTGGCCATCGTGTACCCCTTCCGCTCACGCTCAGTGCGGACCAGGCGCAATGCTGCTGTGGTGTGCGCCGGGGTGTGGCTCCTGGTGCTGGGTGGGGGGATCTCCGTCTCTTTCTTCTCCACCACCAACGTGTCCAACTCCAGCACGACCTGCTTCGAGGGCTTCTCCAAGAAGACCTGGAGGACCTACTTGTCCAAGATCACCATCTTCATCGAGCTGGTCGGCTTCCTCATCCCACTGCTGCTCAACCTAGCCTGCTCCTCCATGGTGCTGCGGACGCTGCGCAAGCCGGCCACGCTATGCCAGATTGGCACCAACAAGGAACGGGTGCTGCGCATGATCGTGGTTCACGTGGCCATCTTCGTGGTGTGTTTCGTGCCCTACAACTCCATCCTCTTCCTCTACGCCATGGTGCGCTCCCAGGCATTGGCCAGTTGCTGGCTGGAGCGCTTCGCCCGCACCATGTACCCCATCACCCTCTGCATTGCCACACTCAATTGCTGCTTCGACCCCTTCGTCTACTACTTCACCTCCGAGTCCTTCCAGAAGTCCCTGGGCACGGGGAAAGGCCAGACCAAGAATGACAACACGTTCAAGAGCGACGTACCCCTCTCCAGCAAAGACAGCCCGCCCACCCTATCCgagcgggggcgggggggtgctCACAGGACAGACAGCAATGGCAGGGAGCTCTTGTCTGAGTCTCAGTTCTGATCCCCCCCTCCCTTTATACAAGGATTTTCTGTTCTTCGCCTTCTGTTGGGTTTTCATAAGAGCAGCATTTGACagacaaaatggaaatgtgtcTTATTGCTGCCGATTGGAAGGTTTGAAAAGCTCTGTTGCATAAGCTGAGAGTTGGATGATGTCAGCAGGCACTGGCTTTCTATTGTGTCACTGAAGGGGCTCAGTGGGAACCTGAGGGGGTGTTTGGCCCTGTCTGAAGATTTTGCACCAGAATAATTATGCATCTTGTTGttggaaataaaatcaatcacaaTCTCATTATTCATAAGCTGGGATAACTCAAAAAGATATCAAGAGTCAAGTCAAAATTACTTTGGGATCTTTCGGAATCTCTCAGGCTTTGCAAATTATGTAATTCCCAAGGAGTGGAGTATGCTCAAGAAGGATGGTGTCCAATCAAACAAGTGGAAACCCCTTAAGATCCTGTGAGACCAAACATTCAGGACAATTGTTTTGACTGAATCAGTGAAGCCCCAAGATCTTCCTGAAGTCTCATTGACACTTGGCAGTCCTTTCCTACTAGATGAATGCATTAGTTTTAGACACTGGAAGAGTTGGTGTGAAAGGGAGGAGGATTGTGACCTTGTGTAGCTGTTTAtggttgttgtgtgtgtaatatactCTGTATCTGCTGTAGCACAGTGCTTCAAATGCTTAACCGTGCACTGCTCACACTGCATAACCAGTAGCCTAGGgacaacacaaatacagacacagCTACCTCATAGTGTCCTTAGTATGGCACTGTGTGGGCCCAGTCTTAGCCTTAGTGTCTTCTTTCCTCCCTCTGGGAGGTAACCGGAACTAGTCCTgtccctgttttgttttgttttctagtgCAGTGACAGAAGCTGGTCTCTGCGATGAGcctgtctgtttctgtgggaACGACAGCAGGACTGAGCAGCGCTGTGGAATGTTCTCTGGAGCTCTTCTCCTCAAAAGCACTGTCTGCTACCCTCCCAGCACTGTGAGACAGCATTACCTGTTTTGGTAGAATTAGTGGTGCCCCCCACTATAAAATTCCATTGATTCTGGCCAAGTACTGGTGTGCAAAATATCCCAATGCTATCCTGCCAGTTGTGCTGCCATTGAGAATAATAACATAATAGCAGCCTGTACACATCACATTACCTCTGATACAAGCTGTCAGGCTTGGCTTGCCACTTACTTCTAATAGCCTGGTGTATGTGCTGTGTAGTTATAGGCCCAAGCATTAGTTAAAATTACATCCAGTACTCCCGACGGCACCCCTCCCTGGAGTCTGTCAGTTCCCTATGCGCCGCCCTGCCTGAGACTCTCACTGGCTGTGGTCAGAAACACAGGATGTTTAAAGTTGCCCCAGGGGCAGGATTGTTCTGGGTGCTGCAGTTTTCCTGCTGCTTAAAAAAAGGGGTTTCCACACTTTGTTTGCGACAGACAATGCATGTATGAGGTTTATGGTGATTATGAAGGAAAACacagaggggggtggggggagcggTGGAGTGAGAGTACTGAGCTCTAACATATTGTGAAAACTGGCCGTGCAGCAGAACAAGAAAGCATACAGTACAGTTTAAGTACAAAAGTGTTTATTATTCATCCACATTCATAAACTGTAGTGAAAAGATCAATGtagatttattaaaaataaataatttatttatattttattttttaatttaatatatagatGTGGTTGTGTAGCTTCACAACACAGCACTGGAGAGGGCAGGACACTGGTCTGTAGAGCCTGCTGCAGGCTGACCTCACATTCCAAGCCGTCATTACAGATCATTCACAATCGGTGTGTCGAAGATTAAGTTGCAGGGCTTTCTGAAGTGGTCTGGACTCTGCACGCACTGGGggaggaaataataataataaggcggaaaataaacataacaacaGTATAAAACATGCtctttacagaaaataaaagcacaagaACACTTTACTTATTGCTTACTCTAACAGAAGTGAGGTTATTGTAAGGGCCAGTGAGGACCTGAAGCAGCAGCTAGGAACACCGATTGTGTGAATTAGAACCAGGAAGTGCCTGGACTCCACACATGAACACGCAGCACCCCAGCACATGGTTGGGCACTACTATTTGCTTCCTCTTTGTTAGAACTTATGCTGTATTGCTGTTCACTGATTTCAAAGCCCTGCCTATCGCTGTTGGAGAGGTTTGAGATGTGCCGATAAAAGCCCACTGGATAATAGATGGATCCCTGTACCTCCCTAGGACATAGCCTGCACTTGTACAAAAGCTTGACTGTACTGGGGCCGTCATGCTGACATGCAGGAAAGAACGAAATGTCTGTATTTGAAAGTGTTAAAGTTTACTCTGAGAATTGACAACACTGTGAACAGGAACAGAAGAGCACTTTTGTAGAATTCACTGTTGGAGTTGTTACAGATTAACGAgcaattaaaaggaaatgtgcCCTGTAAATAAAACGTGTTTTCATTCTGGCacattgaccaatt

Function

GO: NA

KEGG:

id description
K04275 LPAR4, GPR23; lysophosphatidic acid receptor 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021416 True 4260 mRNA 0.51 2 16778582 16790852

Neighbor

gene id symbol gene type direction distance location
AMCG00021415 NA coding upstream 22210 16754933 ~ 16756372 (+)
AMCG00021408 NA coding upstream 122696 16653440 ~ 16655886 (+)
AMCG00021407 LOC105927798,LOC100704732,LOC103366304,LOC102229095,LOC107386560,LOC101162152,LOC101061287 coding upstream 136095 16636355 ~ 16642487 (+)
AMCG00021403 NA coding upstream 199038 16573928 ~ 16579544 (+)
AMCG00021401 NA coding upstream 216806 16556598 ~ 16561776 (+)
AMCG00021417 NA coding downstream 6806 16797658 ~ 16806805 (+)
AMCG00021419 NA coding downstream 41430 16832282 ~ 16833265 (+)
AMCG00021418 tbx22,LOC103376188 coding downstream 85146 16875998 ~ 16884879 (+)
AMCG00021421 fam46d,LOC100149701,LOC107572331,LOC107674891,LOC107753211,LOC107688579,LOC107564205 coding downstream 131719 16922571 ~ 16929677 (+)
AMCG00021424 sh3bgrl coding downstream 256761 17047613 ~ 17063209 (+)
G85784 NA non-coding upstream 128734 16647139 ~ 16649848 (+)
G85766 NA non-coding upstream 181680 16596201 ~ 16596902 (+)
G85763 LOC105929187 non-coding upstream 189171 16586317 ~ 16589411 (+)
G85760 NA non-coding upstream 193817 16584317 ~ 16584765 (+)
G85758 NA non-coding upstream 205714 16572193 ~ 16572868 (+)
G85823 NA non-coding downstream 16954 16807806 ~ 16809314 (+)
G85876 NA non-coding downstream 245720 17036572 ~ 17042575 (+)
G85903 NA non-coding downstream 295900 17086752 ~ 17087794 (+)
G85941 NA non-coding downstream 507307 17298159 ~ 17298813 (+)
G85976 NA non-coding downstream 668641 17459493 ~ 17459941 (+)
G85787 NA other upstream 64544 16656644 ~ 16714038 (+)
G85764 LOC103366846,LOC106930986 other upstream 185609 16590181 ~ 16592973 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other upstream 704961 16063499 ~ 16073621 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other upstream 1346218 15428477 ~ 15432364 (+)
AMCG00021292 NA other upstream 2705457 14069330 ~ 14073125 (+)
G85869 NA other downstream 207025 16997877 ~ 17004131 (+)
AMCG00021441 NA other downstream 679473 17470325 ~ 17473396 (+)
G86121 NA other downstream 1457638 18248490 ~ 18249686 (+)
AMCG00021472 NA other downstream 2256197 19047049 ~ 19055103 (+)
AMCG00021485 NA other downstream 2488913 19279765 ~ 19294779 (+)

Expression


Co-expression Network