AMCG00021421 (fam46d,LOC100149701,LOC107572331,LOC107674891,LOC107753211,LOC107688579,LOC107564205)


Basic Information

Item Value
gene id AMCG00021421
gene name fam46d,LOC100149701,LOC107572331,LOC107674891,LOC107753211,LOC107688579,LOC107564205
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16922571 ~ 16929677 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021421
atgTACAGGCTGAAGAAAGCCATGATTTTTTTAAACATGACAGAGCACTCAGATCGCAGGTTCCACAACCTCACCAGGGAGCAGGTGGAGACGCTGGACCAAGTGCTCACCGAGGTGATACCCATTCATGGAAGAGGCAACTTCCCCACGCTGGAGGTCAAACCAAAGGACATCATCCATGTGGTGAAGGACCGGCTGGTGGAGAAAGAGATCACCGTGCGTGATGTCCGACTCAATGGCTCCACTGCCAGCCACGTCCTGGTCAAGGAGAACGGGACAAGTTACAAGGACCTGGACATCATCTTTGGCGTTGAGCTGCCCAAGCAGGAGGATTTCCAGATCATCAAGGAGGTGGTCCTGGACTGTCTGCTGGACTTCCTGCCCAAATTGGCCACCGTGGCCAGGGAGCTGCCTGTGATAACAGTGGTGGCGGAGAGCATGTATGGTGATTTTGAGCAGGCGATGGACCACCTTCGGTACCGCCTGATCGCCACGCGCAATCCAGAGGAGATCCGCGGCGGGGGCCTACTGAAGTACAGCAATCTGCTGGTACGGGAGTTCAGGCCGGCAAGCGAGACGGAGATTAAGACACTGGAGCGCTACATGTGCTCACGCTTCTTCATCGACTTTCCCGATGTCAATGAGCAGCAGCGCAAGATTGAATCGTACCTGCGCAACCACTTCATCGGAGAGGAGAAGAGCAAATATGACTACCTGATGACGCTGCGCCGAGTGGTGAACGAGAGCACCGTCTGCCTCATGGGCCATGAGCGCAGGCAGACCCTCAACATGATCACTATTCTGGCCCTGAAGGTGCTGGGTGAGCAGAACATCATCCCCAACACCAACAACGTCACCTGCTACTACCAGCCTGCCCCCTACATCGCCGACCGCAACTTCAACAACTACTACATCGCCCACGGGCAGCCCCCTTTGATCTACCACCCTTACCCCCTGCACATTCACATGCAGACTGGTCTGGTGTAG

Function

symbol description
fam46d terminal nucleotidyltransferase 5D

NR:

description
PREDICTED: protein FAM46D

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021421 True 987 mRNA 0.56 3 16922571 16929677

Neighbor

gene id symbol gene type direction distance location
AMCG00021418 tbx22,LOC103376188 coding upstream 37692 16875998 ~ 16884879 (+)
AMCG00021419 NA coding upstream 89306 16832282 ~ 16833265 (+)
AMCG00021417 NA coding upstream 115766 16797658 ~ 16806805 (+)
AMCG00021416 NA coding upstream 131719 16778582 ~ 16790852 (+)
AMCG00021415 NA coding upstream 166199 16754933 ~ 16756372 (+)
AMCG00021424 sh3bgrl coding downstream 117936 17047613 ~ 17063209 (+)
AMCG00021423 NA coding downstream 136936 17066613 ~ 17071130 (+)
AMCG00021429 NA coding downstream 142674 17072351 ~ 17080517 (+)
AMCG00021430 NA coding downstream 153062 17082739 ~ 17097379 (+)
AMCG00021433 pou3f4,LOC108266720 coding downstream 296163 17225840 ~ 17226928 (+)
G85823 NA non-coding upstream 113257 16807806 ~ 16809314 (+)
G85784 NA non-coding upstream 272723 16647139 ~ 16649848 (+)
G85766 NA non-coding upstream 325669 16596201 ~ 16596902 (+)
G85763 LOC105929187 non-coding upstream 333160 16586317 ~ 16589411 (+)
G85760 NA non-coding upstream 337806 16584317 ~ 16584765 (+)
G85876 NA non-coding downstream 106895 17036572 ~ 17042575 (+)
G85903 NA non-coding downstream 157075 17086752 ~ 17087794 (+)
G85941 NA non-coding downstream 368482 17298159 ~ 17298813 (+)
G85976 NA non-coding downstream 529816 17459493 ~ 17459941 (+)
G85992 NA non-coding downstream 577849 17507526 ~ 17509083 (+)
G85787 NA other upstream 208533 16656644 ~ 16714038 (+)
G85764 LOC103366846,LOC106930986 other upstream 329598 16590181 ~ 16592973 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other upstream 848950 16063499 ~ 16073621 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other upstream 1490207 15428477 ~ 15432364 (+)
AMCG00021292 NA other upstream 2849446 14069330 ~ 14073125 (+)
G85869 NA other downstream 68200 16997877 ~ 17004131 (+)
AMCG00021441 NA other downstream 540648 17470325 ~ 17473396 (+)
G86121 NA other downstream 1318813 18248490 ~ 18249686 (+)
AMCG00021472 NA other downstream 2117372 19047049 ~ 19055103 (+)
AMCG00021485 NA other downstream 2350088 19279765 ~ 19294779 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007726 tent5d coding NC_007125.7 CM002898.2 9343860 ~ 9355177 (-)
grasscarp (Ctenopharyngodon idella) G454830 NA non-coding CI01000320 null 1676299 ~ 1689008 (-)