AMCG00021433 (pou3f4,LOC108266720)


Basic Information

Item Value
gene id AMCG00021433
gene name pou3f4,LOC108266720
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 17225840 ~ 17226928 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021433
ATGGCCACAGCTGCCTCGAATCCCTACAGCATTATCAGTTCCAATTCTATGGTTCACACAGATTCATCGGTCATGCAACAAGGGAGCCCTTTCAGGAATCATCAGAAACTTCTCCAAAGTGAATACCTACAGGGAGTCCCCAGCAATGGACACCCTCTTGGGCACCAGTGGGTGACCAGCTTATCCGAGGGGAGCCCATGGGCAACGTCTTTAGCAGCCAGTCCTCTGGAGCAGCAGGATGTGAAACCGGGGCGGGAAGACCTCCAACTCGGGGCGATCATTCATCACAGGTCTCCTCATGTCGCCCATCACTCGCCCCATACAAATCATCCAGGAGCATGGGGAGCAAGCGCGTCTCATAACTCATCTATTAACACCGGTGGACAACCTATCAACATCTACACGCAGCCGGGATTCACGAACATGTGCAAACTGAAGCCCCTGTTAAACAAGTGGCTGGAGGAGGCAGACTCGTCCACGGGCAGCCCGAGCAGCATCGATAAAATAGCAGCGCAAGGGAGGAAACGGAAGAAAAGGACCTCAATCGAAGTCAGCGTCAAAGGGGTGCTGGAGACCCACTTTCTGAAATGCCCTAAACCTGCAGCCCAGGAGATCTCCTCCTTGGCTGACAGCCTGCAGTTAGAGAAAGAGGTGGTTCGTGTCTGGTTTTGTAACAGAAgacaaaaggagaaaagaatGACTCCTCCGGGAGAGCAGCAGCCACACGAGGTTTACTCGCACAGCGTTAACACGGACAGCTCCTCTTGCCGTGATCTCTGA

Function

symbol description
pou3f4 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in cochlea morphogenesis; negative regulation of mesenchymal cell apoptotic process; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within forebrain neuron differentiation; inner ear development; and sensory perception of sound. Located in nucleoplasm. Implicated in X-linked deafness 2.

NR:

description
PREDICTED: POU domain, class 3, transcription factor 4

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021433 True 780 mRNA 0.53 2 17225840 17226928

Neighbor

gene id symbol gene type direction distance location
AMCG00021430 NA coding upstream 128461 17082739 ~ 17097379 (+)
AMCG00021429 NA coding upstream 145323 17072351 ~ 17080517 (+)
AMCG00021423 NA coding upstream 154710 17066613 ~ 17071130 (+)
AMCG00021424 sh3bgrl coding upstream 162631 17047613 ~ 17063209 (+)
AMCG00021421 fam46d,LOC100149701,LOC107572331,LOC107674891,LOC107753211,LOC107688579,LOC107564205 coding upstream 296163 16922571 ~ 16929677 (+)
AMCG00021431 NA coding downstream 14754 17241682 ~ 17250316 (+)
AMCG00021434 NA coding downstream 112488 17339416 ~ 17364818 (+)
AMCG00021438 LOC108430901,LOC105026965,LOC106603324 coding downstream 144554 17371482 ~ 17399636 (+)
AMCG00021436 NA coding downstream 177090 17404018 ~ 17419822 (+)
AMCG00021443 NA coding downstream 200589 17427517 ~ 17428203 (+)
G85903 NA non-coding upstream 138046 17086752 ~ 17087794 (+)
G85876 NA non-coding upstream 183265 17036572 ~ 17042575 (+)
G85823 NA non-coding upstream 416526 16807806 ~ 16809314 (+)
G85784 NA non-coding upstream 575992 16647139 ~ 16649848 (+)
G85766 NA non-coding upstream 628938 16596201 ~ 16596902 (+)
G85941 NA non-coding downstream 71231 17298159 ~ 17298813 (+)
G85976 NA non-coding downstream 232565 17459493 ~ 17459941 (+)
G85992 NA non-coding downstream 280598 17507526 ~ 17509083 (+)
G85993 NA non-coding downstream 282157 17509085 ~ 17509295 (+)
G85999 NA non-coding downstream 286200 17513128 ~ 17513621 (+)
G85869 NA other upstream 221709 16997877 ~ 17004131 (+)
G85787 NA other upstream 511802 16656644 ~ 16714038 (+)
G85764 LOC103366846,LOC106930986 other upstream 632867 16590181 ~ 16592973 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other upstream 1152219 16063499 ~ 16073621 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other upstream 1793476 15428477 ~ 15432364 (+)
AMCG00021441 NA other downstream 243397 17470325 ~ 17473396 (+)
G86121 NA other downstream 1021562 18248490 ~ 18249686 (+)
AMCG00021472 NA other downstream 1820121 19047049 ~ 19055103 (+)
AMCG00021485 NA other downstream 2052837 19279765 ~ 19294779 (+)
G86407 NA other downstream 2272872 19499800 ~ 19501242 (+)

Expression


Co-expression Network