G85823


Basic Information

Item Value
gene id G85823
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16807806 ~ 16809314 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU107124
GGATGTGAGCCTAAGACTTCACTCTGCAGTTATCACACAAGGAAGCACATGATATTGTTAGTTCTTAGGCTTTCTGTTAGGGAGATAGCCACACTCCGAAATTAATCACTCTTTGACTTTTGATCAAAACCCCCCAACCaaccaaatcaatttaaatataaattttaaCTCATATGCAGGGAAGCTGTACACCTTAGTTTAATAGTGTCAAAGTGTAGTGTCACATGATTTCTTAGAAAAATCTTTCAAAATACTCTTTGCTTGACCTACTTAAGAAACCCTTAAGCAGAAGAACAAAAGTGTTATTCAAGTCCTTTGGTTTatgacacaattatatttttatactaaTTTAAACATTAGAGATCATAAAAAGAACATAAATGTTGACAATACGATGTCTGCTTTTATTACCCTGCTAATTGGAAAGGTAATATATCATCTTACATGCAGCTGGCTGCAACATGCTCAAATTTTCCACAACTGTGTAGGTAAATCCTATAGTGAGATTTAACTGGCCCTGAAAGACTGTGTTGGGCCATGAGTGTACCGAAGAGGCCCAATCCAGAACCtcttagatgtatttatttatttattaagactatgaaatattaatatttaattatgtaatattaCGATTAATAGTCATGTTAGGGTAGGTGAAGTCAGAGTTCACATGGAACAAGCTGAGCTGTGTCTTGTGGGGCCGTGTGGTTGACACTGCAGAGTATCCCTACTGATCCCCTTGGCTCAGCCCAAACGACTTGCGATTCTGTTCAGTCTGCTGTTCGATCCtcagcaaaaagcaaaacaagaacaaaagtaCAGTCCAAGCAAGGACAAATCCTGCAGATGCACGACATGCCCACACACAGTGTCGCTGAGACATATACTTTCCACTGCAATcgcagacgcacacacagtcacactatGACCTGTAGTTCAACATCTACTTCTCTTCACACATTTGTGTTCAGAGTGGAACTTCAAgctacttttttttgtttcatttgtttctatttaaaaaaatctgagcCACTGTTCCTCAGAATATGGGGAATAAACAATGACTGCTGTATTTAGATTTGGTTTCATTGTTGGGTGACGCATTCCTGTTGACTGTTTATGTGTGGAATTTGCTTTAGGATTGCAATCAAAATGTTGGTTTTACCCAATAAGCAAAACCACCAAACATGTCTGAATCTAAAGCCATTACTTACATTTCCAGAAATTTTAGGAAGTTGAATTGGAAATTAAACTATCAGCAtgaactttattttcatgtatttcaatgtttttgttttttcatgtacttttgcatattttgtctctctccctctgggCCACACTATGTCCAGGCTGAATTGTTCTCTTTTCATAAGCTGCTTTCTGTTGTCCCTTCTGTTGTCCCTTGGACACAGTAACTGAAGTCGCTGATGTAAGCTGATATAGAAATGTGCTGCCTAACACACTAAATGTttgcaataagaaaaataaaataaaaaaatctga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107124 True 1509 lncRNA 0.37 1 16807806 16809314

Neighbor

gene id symbol gene type direction distance location
AMCG00021417 NA coding upstream 1001 16797658 ~ 16806805 (+)
AMCG00021416 NA coding upstream 16954 16778582 ~ 16790852 (+)
AMCG00021415 NA coding upstream 51434 16754933 ~ 16756372 (+)
AMCG00021408 NA coding upstream 151920 16653440 ~ 16655886 (+)
AMCG00021407 LOC105927798,LOC100704732,LOC103366304,LOC102229095,LOC107386560,LOC101162152,LOC101061287 coding upstream 165319 16636355 ~ 16642487 (+)
AMCG00021419 NA coding downstream 22968 16832282 ~ 16833265 (+)
AMCG00021418 tbx22,LOC103376188 coding downstream 66684 16875998 ~ 16884879 (+)
AMCG00021421 fam46d,LOC100149701,LOC107572331,LOC107674891,LOC107753211,LOC107688579,LOC107564205 coding downstream 113257 16922571 ~ 16929677 (+)
AMCG00021424 sh3bgrl coding downstream 238299 17047613 ~ 17063209 (+)
AMCG00021423 NA coding downstream 257299 17066613 ~ 17071130 (+)
G85784 NA non-coding upstream 157958 16647139 ~ 16649848 (+)
G85766 NA non-coding upstream 210904 16596201 ~ 16596902 (+)
G85763 LOC105929187 non-coding upstream 218395 16586317 ~ 16589411 (+)
G85760 NA non-coding upstream 223041 16584317 ~ 16584765 (+)
G85758 NA non-coding upstream 234938 16572193 ~ 16572868 (+)
G85876 NA non-coding downstream 227258 17036572 ~ 17042575 (+)
G85903 NA non-coding downstream 277438 17086752 ~ 17087794 (+)
G85941 NA non-coding downstream 488845 17298159 ~ 17298813 (+)
G85976 NA non-coding downstream 650179 17459493 ~ 17459941 (+)
G85992 NA non-coding downstream 698212 17507526 ~ 17509083 (+)
G85787 NA other upstream 93768 16656644 ~ 16714038 (+)
G85764 LOC103366846,LOC106930986 other upstream 214833 16590181 ~ 16592973 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other upstream 734185 16063499 ~ 16073621 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other upstream 1375442 15428477 ~ 15432364 (+)
AMCG00021292 NA other upstream 2734681 14069330 ~ 14073125 (+)
G85869 NA other downstream 188563 16997877 ~ 17004131 (+)
AMCG00021441 NA other downstream 661011 17470325 ~ 17473396 (+)
G86121 NA other downstream 1439176 18248490 ~ 18249686 (+)
AMCG00021472 NA other downstream 2237735 19047049 ~ 19055103 (+)
AMCG00021485 NA other downstream 2470451 19279765 ~ 19294779 (+)

Expression


Co-expression Network