AMCG00021430


Basic Information

Item Value
gene id AMCG00021430
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 17082739 ~ 17097379 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021430
tctggctgtcccagCTCCTCTTTTTACCTCACACAGCTCCACACTTCTTCATCTAGCTTCAGGGACACCATGAAAGCAGGCATTGCCGCATTCGTGGCCGGCGTCGTGGGCACAGCCGGCCTTCTGTGTTTCCTAACCGCGTTTGGAACTGATTACTGGCTCCTGGCCAGCGATAGCTGTGAGGGGAACGAGACGCCACAGCCTGGGAACAACACTGGCACAGCAGGCCCCAGTAATGGCACCAAGGAAGTCACTGTGACAAAGACGAACTCCACCCCCTCTCATCGCACCTTCCATCATGAGGGGTTCTTCTGGCGCTGCTGGTTCCGGGAGGGCAGCTCGTCTCACTCCGTCTGGACATTCCTATTCACAAACCAGCCACCCTCCAAGCTGTGTGTTCATGGGTACCTGTTCCCCCTGCCCATTGCCATTGCGCCCGTCCCACATCCCTCCTACGATGCCACTGCAGTGTTCAGgggcttctggacagtgttcaTCGTGCTGGCGATGGCTGCTTGCCTGGCGGGGGGGTTCTTGCTGGTGTGTGCTGTTCCCTTCATCAGTGCCAAGCTCTACAGACTGGGTGGAGCCTTCCTGATCTCTGCCGCTGTCCTGTTCCTGTTGCTGGTGTGTCTGTTCGCCCTGTGGAAGGAGGTGGCCGCTGACGTGCCACGCTACATCCTCTTGGAGCGCAGCGAGGCCTGCCACCCCACCACGGTCATCGCGCAATACGGCTGGTCCTTCATGTTTGCTGCTGCTGGAATCCCATTGGTCCTCCTTTCCGGGCTGCTCTTCTATTTCATTGGCCGAGGGCAGCAGTGGTACGAGGTGGCTGGGTGGCAACAGTCCCTGGAGGAGGTGTTTGTACACAGCAGCACAGGACGTGACACTGAAGCTCTTTAG

Function

GO: NA

KEGG:

id description
ko03050 Proteasome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021430 True 903 mRNA 0.59 6 17082739 17097379

Neighbor

gene id symbol gene type direction distance location
AMCG00021429 NA coding upstream 2222 17072351 ~ 17080517 (+)
AMCG00021423 NA coding upstream 11609 17066613 ~ 17071130 (+)
AMCG00021424 sh3bgrl coding upstream 19530 17047613 ~ 17063209 (+)
AMCG00021421 fam46d,LOC100149701,LOC107572331,LOC107674891,LOC107753211,LOC107688579,LOC107564205 coding upstream 153062 16922571 ~ 16929677 (+)
AMCG00021418 tbx22,LOC103376188 coding upstream 197860 16875998 ~ 16884879 (+)
AMCG00021433 pou3f4,LOC108266720 coding downstream 128461 17225840 ~ 17226928 (+)
AMCG00021431 NA coding downstream 144303 17241682 ~ 17250316 (+)
AMCG00021434 NA coding downstream 242037 17339416 ~ 17364818 (+)
AMCG00021438 LOC108430901,LOC105026965,LOC106603324 coding downstream 274103 17371482 ~ 17399636 (+)
AMCG00021436 NA coding downstream 306639 17404018 ~ 17419822 (+)
G85876 NA non-coding upstream 40164 17036572 ~ 17042575 (+)
G85823 NA non-coding upstream 273425 16807806 ~ 16809314 (+)
G85784 NA non-coding upstream 432891 16647139 ~ 16649848 (+)
G85766 NA non-coding upstream 485837 16596201 ~ 16596902 (+)
G85763 LOC105929187 non-coding upstream 493328 16586317 ~ 16589411 (+)
G85941 NA non-coding downstream 200780 17298159 ~ 17298813 (+)
G85976 NA non-coding downstream 362114 17459493 ~ 17459941 (+)
G85992 NA non-coding downstream 410147 17507526 ~ 17509083 (+)
G85993 NA non-coding downstream 411706 17509085 ~ 17509295 (+)
G85999 NA non-coding downstream 415749 17513128 ~ 17513621 (+)
G85869 NA other upstream 78608 16997877 ~ 17004131 (+)
G85787 NA other upstream 368701 16656644 ~ 16714038 (+)
G85764 LOC103366846,LOC106930986 other upstream 489766 16590181 ~ 16592973 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other upstream 1009118 16063499 ~ 16073621 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other upstream 1650375 15428477 ~ 15432364 (+)
AMCG00021441 NA other downstream 372946 17470325 ~ 17473396 (+)
G86121 NA other downstream 1151111 18248490 ~ 18249686 (+)
AMCG00021472 NA other downstream 1949670 19047049 ~ 19055103 (+)
AMCG00021485 NA other downstream 2182386 19279765 ~ 19294779 (+)
G86407 NA other downstream 2402421 19499800 ~ 19501242 (+)

Expression


Co-expression Network