RNA id: AMCG00021421


Basic Information

Item Value
RNA id AMCG00021421
length 987
RNA type mRNA
GC content 0.56
exon number 3
gene id AMCG00021421
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16922571 ~ 16929677 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgTACAGGCTGAAGAAAGCCATGATTTTTTTAAACATGACAGAGCACTCAGATCGCAGGTTCCACAACCTCACCAGGGAGCAGGTGGAGACGCTGGACCAAGTGCTCACCGAGGTGATACCCATTCATGGAAGAGGCAACTTCCCCACGCTGGAGGTCAAACCAAAGGACATCATCCATGTGGTGAAGGACCGGCTGGTGGAGAAAGAGATCACCGTGCGTGATGTCCGACTCAATGGCTCCACTGCCAGCCACGTCCTGGTCAAGGAGAACGGGACAAGTTACAAGGACCTGGACATCATCTTTGGCGTTGAGCTGCCCAAGCAGGAGGATTTCCAGATCATCAAGGAGGTGGTCCTGGACTGTCTGCTGGACTTCCTGCCCAAATTGGCCACCGTGGCCAGGGAGCTGCCTGTGATAACAGTGGTGGCGGAGAGCATGTATGGTGATTTTGAGCAGGCGATGGACCACCTTCGGTACCGCCTGATCGCCACGCGCAATCCAGAGGAGATCCGCGGCGGGGGCCTACTGAAGTACAGCAATCTGCTGGTACGGGAGTTCAGGCCGGCAAGCGAGACGGAGATTAAGACACTGGAGCGCTACATGTGCTCACGCTTCTTCATCGACTTTCCCGATGTCAATGAGCAGCAGCGCAAGATTGAATCGTACCTGCGCAACCACTTCATCGGAGAGGAGAAGAGCAAATATGACTACCTGATGACGCTGCGCCGAGTGGTGAACGAGAGCACCGTCTGCCTCATGGGCCATGAGCGCAGGCAGACCCTCAACATGATCACTATTCTGGCCCTGAAGGTGCTGGGTGAGCAGAACATCATCCCCAACACCAACAACGTCACCTGCTACTACCAGCCTGCCCCCTACATCGCCGACCGCAACTTCAACAACTACTACATCGCCCACGGGCAGCCCCCTTTGATCTACCACCCTTACCCCCTGCACATTCACATGCAGACTGGTCTGGTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107124 lncRNA upstream 113257 16807806 ~ 16809314 (+) True G85823
TU107071 lncRNA upstream 272723 16647139 ~ 16649848 (+) True G85784
TU107051 lncRNA upstream 325669 16596201 ~ 16596902 (+) True G85766
TU107047 lncRNA upstream 333160 16586317 ~ 16589411 (+) True G85763
TU107044 lncRNA upstream 337806 16584317 ~ 16584765 (+) True G85760
TU107184 lncRNA downstream 106895 17036572 ~ 17042575 (+) True G85876
TU107214 lncRNA downstream 157075 17086752 ~ 17087794 (+) True G85903
TU107274 lncRNA downstream 368482 17298159 ~ 17298813 (+) True G85941
TU107314 lncRNA downstream 529816 17459493 ~ 17459941 (+) True G85976
TU107316 lncRNA downstream 540648 17470325 ~ 17473396 (+) True AMCG00021441
AMCG00021418 mRNA upstream 37692 16875998 ~ 16884879 (+) True AMCG00021418
AMCG00021419 mRNA upstream 89306 16832282 ~ 16833265 (+) True AMCG00021419
AMCG00021417 mRNA upstream 115766 16797658 ~ 16806805 (+) True AMCG00021417
AMCG00021416 mRNA upstream 131719 16778582 ~ 16790852 (+) True AMCG00021416
AMCG00021415 mRNA upstream 166199 16754933 ~ 16756372 (+) True AMCG00021415
AMCG00021424 mRNA downstream 117936 17047613 ~ 17063209 (+) True AMCG00021424
AMCG00021423 mRNA downstream 136936 17066613 ~ 17071130 (+) True AMCG00021423
AMCG00021429 mRNA downstream 142674 17072351 ~ 17080517 (+) True AMCG00021429
AMCG00021430 mRNA downstream 153062 17082739 ~ 17097379 (+) True AMCG00021430
AMCG00021433 mRNA downstream 296163 17225840 ~ 17226928 (+) True AMCG00021433
TU107080 other upstream 208533 16656644 ~ 16714038 (+) False G85787
TU107079 other upstream 260689 16656644 ~ 16661882 (+) True G85787
TU107049 other upstream 329598 16590181 ~ 16592973 (+) True G85764
TU106850 other upstream 848953 16063600 ~ 16073618 (+) False AMCG00021373
TU105723 other upstream 4821864 12075345 ~ 12100707 (+) True G84749
TU107177 other downstream 68200 16997877 ~ 17004131 (+) True G85869
TU107506 other downstream 1318813 18248490 ~ 18249686 (+) True G86121
TU107757 other downstream 2350088 19279765 ~ 19282915 (+) False AMCG00021485
TU107857 other downstream 2570123 19499800 ~ 19501242 (+) True G86407
TU108101 other downstream 3412933 20342610 ~ 20401249 (+) False G86601

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00015132 True 1295 mRNA 0.44 3 NC_007125.7 9343860 ~ 9355177 (-)
grasscarp (Ctenopharyngodon idella) TU522225 True 3781 lncRNA 0.39 2 CI01000320 1676299 ~ 1689008 (-)