RNA id: TU107857



Basic Information


Item Value
RNA id TU107857
length 488
RNA type TUCP
GC content 0.60
exon number 2
gene id G86407
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19499800 ~ 19501242 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTCCGGCTTCCTGCTTCCCTGAGAAGATAAACCCTGGCACAAACACCCCCCTCTGCACACGTTTTCCAAGGCGTGTCATTCCTCACCGAGCTTGGGGTCGAACCTCCAGACGGGAATGTGGTCATTCTCCTTCAGCTGGCTGTCTGCCGGCAGCGGCACGGTGACGTAGATGGGCCCCCCCACGCCAATCTCCGTGCTGTCGCTGCTAAGCAAATGAATGCTGACGGCGGTGACGGGGGTCAGCTCGAACCTCCTNNNNNNNNCCGTGCCGTTGCCCCCCAGGCCCTGCAGGTAGGGGAAGAGGTCAAGCTCCCAGGCCGAGGTGCCAGTGGTCAGGTGGGCCGTGAGGTTGCTGTAGGTGGTGTTGGGGGGCAGAGCCAGTGTTCTCCTCTGGAACTGGACCCGGGGCTGCACCCTCGAACCTGGagcaacacaacaaacacacaagtaaACAAACAGGTGACATCAGCATCTCCGCGCCGATGCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU107824 lncRNA upstream 50693 19448729 ~ 19449107 (+) True G86387
TU107802 lncRNA upstream 104926 19392097 ~ 19394874 (+) True G86367
TU107751 lncRNA upstream 240945 19258458 ~ 19258855 (+) True G86323
TU107735 lncRNA upstream 273032 19224453 ~ 19226768 (+) True G86309
TU107705 lncRNA upstream 346518 19153015 ~ 19153282 (+) True G86284
TU107871 lncRNA downstream 84747 19585989 ~ 19587369 (+) True G86419
TU107908 lncRNA downstream 328574 19829816 ~ 19837813 (+) True G86454
TU107909 lncRNA downstream 351127 19852369 ~ 19894619 (+) True G86455
TU108001 lncRNA downstream 651003 20152245 ~ 20152766 (+) True G86529
TU108008 lncRNA downstream 703950 20205192 ~ 20205538 (+) True G86536
AMCG00021496 mRNA upstream 28771 19470241 ~ 19471029 (+) True AMCG00021496
AMCG00021492 mRNA upstream 34223 19460464 ~ 19465577 (+) True AMCG00021492
AMCG00021493 mRNA upstream 53177 19422724 ~ 19446623 (+) True AMCG00021493
AMCG00021491 mRNA upstream 108046 19384029 ~ 19391754 (+) True AMCG00021491
AMCG00021488 mRNA upstream 156976 19341820 ~ 19342824 (+) True AMCG00021488
AMCG00021501 mRNA downstream 112953 19614195 ~ 19622221 (+) True AMCG00021501
AMCG00021505 mRNA downstream 412290 19913532 ~ 19918822 (+) True AMCG00021505
AMCG00021506 mRNA downstream 436497 19937739 ~ 19945655 (+) True AMCG00021506
AMCG00021510 mRNA downstream 470731 19971973 ~ 19975104 (+) True AMCG00021510
AMCG00021507 mRNA downstream 474361 19975603 ~ 19982429 (+) True AMCG00021507
TU107757 other upstream 216885 19279765 ~ 19282915 (+) False AMCG00021485
TU107506 other upstream 1250114 18248490 ~ 18249686 (+) True G86121
TU107177 other upstream 2495669 16997877 ~ 17004131 (+) True G85869
TU107080 other upstream 2785762 16656644 ~ 16714038 (+) False G85787
TU107079 other upstream 2837918 16656644 ~ 16661882 (+) True G85787
TU108101 other downstream 841368 20342610 ~ 20401249 (+) False G86601
TU108117 other downstream 877181 20378423 ~ 20380424 (+) True G86616
TU108100 other downstream 897684 20398926 ~ 20401249 (+) True G86601
TU108198 other downstream 1166228 20667470 ~ 20667927 (+) True G86688
TU108360 other downstream 1597177 21098419 ~ 21109368 (+) True AMCG00021550

Expression Profile