RNA id: AMCG00021418


Basic Information

Item Value
RNA id AMCG00021418
length 1428
RNA type mRNA
GC content 0.60
exon number 8
gene id AMCG00021418
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16875998 ~ 16884879 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGGGTCTGAGCTCCCGAGCCCATGCTTTCTCCGTGGAAGCCCTGGTCGGCAAACCGTCGTGCAAGAAGATGAAAGTTGAGGATTGCAAAGAAGAGAAAGCCACCCAAGACTCCGTGGACCCCGAGGGGGAGGACAGCTCTGCTTGTACGCCGGGCCTGCGGAGCCCGGTGAGGGTGGACCTGCAGGGCGCGGACCTGTGGACCCGGTTCCATGACATCGGGACGGAGATGATCATCACCAAGGCCGGCAGGAGAATGTTCCCCTCCGTGCGGGTCAAAGTGAAAAACCTGGACCCGTTCAAGCAGTATTACATCGCCATGGACATCCTGCCGGTCGACTCCAAGAGATACAGGTATGTGTACCACAGCTCGCAGTGGATGGTGGCGGGAAACACCGACCACTCGTGCATCACGCCGCGGCTGTACGTGCACCCGGACTCGCCGTGCTCTGGGGAGACGTGGATGCGTCAGGTCATCAGCTTCGACCGGGTCAAGCTCACCAACAACGAGATGGACGACAAGGGACACATTATCTTGCAGTCCATGCACAAGTACAAGCCGCGCGTCCACGTCATCGTGCATGACCCTCGGTTGGACCTGTCGCAGATCCAGTCCCTCCCGGCTGAGGGGGTGCAGACCTTCGCCTTCCCAGAGACCGAGTTCACCACAGTCACTGCCTACCAGAACCAGCAGATCACAAAATTGAAGATTGACAGGAATCCATTTGCCAAGGGCTTCAGAGATCCTGGCAGAAACAGggGAGTGCTGGATGGGATTTTGGAGACGTACCCCTGGCGGAGTCCTCTCAGTCTGGATTTCAAGCACTTTGCCCTGGAAACCCAAGGTGGAAATTCAGGATCTGCCTCCAACTGTGGAACCCTGTCCCCTCTAAAAGGCCTGCTGTCCCCCTCCTGTTCACCCACATCCTTCCCATTCAGCCTCCCCTGCTCGGACAGCTCCCTGCACAGCCTGGGCCTTCCTGTGTGCTACAAGGTGCCCCCCTCAGCCAACTTACTGGGCAGCCGGCCCTATAGCATCCCCGGGCCTGACAGGCTGCGGGGTTCCCTGGGGCTGCAACCACTGGCAGACTTTCCCCTCCTGAGCTCCCTACGCAGTGGGAAAGCCCACGACTGCAGGGGCCACTACCTCCAGGGCCCTCCTCCCAGCCCTGGACAGCTGTCCCTCCAGCGCCTGCATAGCAGCTCCAGCAACGGCTCCAGCCAAGCCCCCTTGCCCCTGCACCACGACCCTCCACCATCCTCCCTGTCGTCGCCCTATGGTCTCTACAGCTACAACCTGCCCATGCCCTCTCGTTTTGCCAGCATCAGCAGGCACTTCACACTGACCGACAGCGTGCCTCTGACGCCTGCAGAAAGCCTGCTCCCCCCGGCGCCCTGGAACTCCACCATCAACCATTGCCTTTGA

Function

GO: NA

KEGG:

id description
K10186 TBX22; T-box protein 22

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107124 lncRNA upstream 66684 16807806 ~ 16809314 (+) True G85823
TU107071 lncRNA upstream 226150 16647139 ~ 16649848 (+) True G85784
TU107051 lncRNA upstream 279096 16596201 ~ 16596902 (+) True G85766
TU107047 lncRNA upstream 286587 16586317 ~ 16589411 (+) True G85763
TU107044 lncRNA upstream 291233 16584317 ~ 16584765 (+) True G85760
TU107184 lncRNA downstream 151693 17036572 ~ 17042575 (+) True G85876
TU107214 lncRNA downstream 201873 17086752 ~ 17087794 (+) True G85903
TU107274 lncRNA downstream 413280 17298159 ~ 17298813 (+) True G85941
TU107314 lncRNA downstream 574614 17459493 ~ 17459941 (+) True G85976
TU107316 lncRNA downstream 585446 17470325 ~ 17473396 (+) True AMCG00021441
AMCG00021419 mRNA upstream 42733 16832282 ~ 16833265 (+) True AMCG00021419
AMCG00021417 mRNA upstream 69193 16797658 ~ 16806805 (+) True AMCG00021417
AMCG00021416 mRNA upstream 85146 16778582 ~ 16790852 (+) True AMCG00021416
AMCG00021415 mRNA upstream 119626 16754933 ~ 16756372 (+) True AMCG00021415
AMCG00021408 mRNA upstream 220112 16653440 ~ 16655886 (+) True AMCG00021408
AMCG00021421 mRNA downstream 37692 16922571 ~ 16929677 (+) True AMCG00021421
AMCG00021424 mRNA downstream 162734 17047613 ~ 17063209 (+) True AMCG00021424
AMCG00021423 mRNA downstream 181734 17066613 ~ 17071130 (+) True AMCG00021423
AMCG00021429 mRNA downstream 187472 17072351 ~ 17080517 (+) True AMCG00021429
AMCG00021430 mRNA downstream 197860 17082739 ~ 17097379 (+) True AMCG00021430
TU107080 other upstream 161960 16656644 ~ 16714038 (+) False G85787
TU107079 other upstream 214116 16656644 ~ 16661882 (+) True G85787
TU107049 other upstream 283025 16590181 ~ 16592973 (+) True G85764
TU106850 other upstream 802380 16063600 ~ 16073618 (+) False AMCG00021373
TU105723 other upstream 4775291 12075345 ~ 12100707 (+) True G84749
TU107177 other downstream 112998 16997877 ~ 17004131 (+) True G85869
TU107506 other downstream 1363611 18248490 ~ 18249686 (+) True G86121
TU107757 other downstream 2394886 19279765 ~ 19282915 (+) False AMCG00021485
TU107857 other downstream 2614921 19499800 ~ 19501242 (+) True G86407
TU108101 other downstream 3457731 20342610 ~ 20401249 (+) False G86601

Expression Profile