RNA id: TU105614


Basic Information

Item Value
RNA id TU105614
length 4373
RNA type TUCP
GC content 0.43
exon number 2
gene id G84657
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 10963148 ~ 10987174 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attagtatggtgttcctaataatcctttaggtgagtgtatatatatatggttttagAATAATATTATACCGAAGATTTCTAGTCAGATAATGTACCCTTCaatcaaatatcaaaataagtttaattcAGTTTGCTTGTTCCTGTTGTGTATGTGAGTTTTATACAAATATCACCCACATATGGTGATATATAAAGATTTAATAACTAGCCAATAAATGATCTGTCAAAATCAGAATGCCTTGATTTGAGAAGTGACACTAAGATTCGGTAGAATTAAATTCAAAAGCTGTCTGACAAATACcaatatacatgtgtgtgtaggtgtgtgtgcgttcgtgcgtgtgtgtgcatctgtgtacACTGCCttacaaaaacattgaatgttAAAATTGATTCTTATTGAACATTTGAATAACTTAATGAAACCTCACTCACCAAGCTAAGACATTGGTGAATTACTGCAGTGAAAAGTTGAGCTCCCTGCAATCacctatactgtatatatatattcagaagcACACTTTGCAATGTTTTGAACGTCTTAAAAGgcacattatatacaaaaacattcttcttcttcacatggataaagcatttttttttcaatttcatttaatGCAATTGACATATAATTCTATTTTACATCTTGaaattcttaaaatacaacacatactTCAACTTAGAGCAGAAAGCAACgttaaaatatttaagtgcAAAGGCACTTCTGGAATCAAATGGGACGCCAAGTGGATGTAACCGGTAAATGTGTtgcacacacaccaccacatgttatatacagaaaaaatcatttcaaatgaCTCATTTTTCTGGACATTTCGAAAGGAAAGGGGGAGGTTCCATTTTAGccataaagaaaatgcataaagctgaattatacatattttgctTGCTACAGTGTAAACGTTTCAAGTagatgaaataatttaaaacttcGACAGTGTAATAGAACACCTGGTACTGCATATATTAAAATTCTCATGTGTACATCTGAGAGAAACGAGAAACAAAATCCCTAGTCAAGTTGTATACATGTCCTCCATACAGTCTGTAGactagatatatatatatatatatatttatatatttatatattgtattgatgaTGTGGGGATtaatacaggtttttttttcttttacagttgGCTGATTGCAGTTTGTTTCTCCAGAACTTCGAGGTAGTCTggttctgtttttagttttccagGAAGCAGAGGCTGTTCGTTTTTTGATTGATCAGCATAATATTTCCTCGGCGTCCCATACAGCACCGTTTTATTGAACCGATCCTGGTTGTGCCGCCTTGCTGGTTCGTATTGGGCGGCGAAGGGCCTTTTCGGTAAGGTGCAGAAATTATAGTTTATCACCCCGGCGGTGGGAAGCTCCTTCACCCTCTCTGCTATGTTCTGGTAGAGCAGCTCTGGCTCTCTGGTCCCGCAGGGCTGCTTCTCAATGAACTCCACGGTGCTTATTGTATAGGCAGGGCTGCGGGACTGCTCGTCCTTTTTGGGGTCCAGGGTGCTGTAACTCAGTTCTTTGAGGTTTCTGTAGTAAGCCACCTGATCCTCTTCTTTCTGCATGTAAATTGGGTTTTGACACATCTGCCCCACGGGAGGGGGGATGTAGTTATAAACGTGGCTCTCTGTTTTGTCGGTGCTGGTCTCTGTGCTGTAGGAGCCATATTGAACCTGGAAAGAGTTTAAGTCCAGATTGTTGGCGCTGGTGGGGACGCTGTCGACGCCTTTGCGTCTTTTtagcacaaatacaaacaagcCTGCGCCGAAGCAGACTGACAAGATGAACACCACCAGTAAACCCAAAATGAGAACCGATAGCGGTACCTCTGTGTGAATCTCTGGCAGGGGGTCTGTGGGGGCACTGGCGGAATAGGGCAGATCCGTGCTGCTGCTAACTGTTGGCACCGTGGTGACTATAATCTGGCTGTTTTCTGGGCAGATGGCATCGTTACGCAGGGATCTCAGGAGCCTACCTGCATGCTTTGAAGGGGAATCGCATGTGATTTCATTAACTACAACGCTAGTGCTCGACAGCTCCATCCAGTTCTTGAGGGCGACAATGTCACAGGTACAATCCCAGGGGTTTTCTTGCAGATCAATCTGAATGAACGCAGAGAGCTGGTCCAGCACACCTCTCACCGGCAGATGGGAGAAGTGGTTGTTCCTGAGGTTAAGCCTGGTCAGCATGGTCCCTCCAAACACGTTATCAGGCAGGGACCTTAACAAGTTGTTGTTCAGAAACAATAACTGCAGATTGTGCAGGGAGTTGAAGGTGTGCGGCAAAATGTCCTTTATGACATTATATTCTAGATACAAATATTGCAGGCTTTGGAGCCCTGAAAATAGCGAGGGAGAAAGACTCTCGATGTAGTTGCCATTAAGGTAAAGTCTGCGTAAATTAGTCAGGTTTTCAAAAGCTCCGTCCTGAATAATTGCTATCCTATTATTCCCCAAGTGAAGCAACTCCAAAGAGCTGTATTCAGTGAGATCAGTCCTATACACGGTGTGTAAATAGTTACCTGTCAGGTGAAGTTTCTTTGGATATGAAGGTTTGGGTTGCAGATCGGatatattatgtaattttttttcttggcaatTTATGTTTATTCCACTGTCCGGGTTCTGAGAAGAACAGATGCACACGTTTGGGCAAATCATTGGCACAGGTGACCTTGTTTGATACACCATTATGGGTCCAAATATCTGTTTGTCTTTATGAGAGATGGTCACCCGAGGTGTGGTGCGGATCTTCATTTTAGGGGGGCGGGAGGCCTTTGGTGCTCTCGTTGGGGTGACCCCGGGGTGCAATGTGGGAGCCGGACCTTGGTACTGCGAATCTGATGCTGGATGCATTGCACGCTGGTTCGAATCACTCTTTCTGGGGCAAAGATCTTGTCTGATCAATTGTGTAATGTCTTTCCCGTGAAGTCGAAACGGCGTCTCACACACAATATCCCCGACAAAGACAGAGATGGTATCCAGCCAGGCTTTGAGAGGGAGCAAATCGCAGGTGCAATTCCAAGGGTTCTCCTCCAGCTGGATCTCCATAATGCCACCTATGTGCTCCAGCACCCCAGCAAAGGGCAGCATCTTCAACCGATTCCCTCTCAGATCCAGATGGGTTAACAAGACAAAGCGAAATACATTGTTGGGGAGGGAAGGCAGGAGGTTGTCATTGAGAATCAGCACTTTGAGTTTATTCAGTTTGCTGAAAGCCCCTGCCTCGATGGCACTAATGTAATTATAGTCTGCTTGCAAATACTCCAAACTTTCCAAGCCCACGAAAGTATCCTCTTTGATCATTTCCAAGTTATTGTTGTTGAGATGCAGTCGTTTTAGGATTTTGAGTCCCATGAAAGCCCCCGTTTGAATCTCCTGTAACCCGTTGTTCCCCAAGTGGAGGGTGCTGACATTGCCATAGTTCACAAACTCGTTGGGCTGAAGTCTGGAGAGGAAGTTTCCATTCAGAAAGAGTTGACAGACTCTGTTTGGAGGCGGCTGGAACTGGTTGACCGCTGTAAATCCCTTGTTTTCGCAGTTGATATTCAGGACATTTTCCTTCTCGTCGCATAGACAGCGATTCTTACAGAGGTCTTTGGTAGTTTTGCGGCTTGAAGAGAAACCGGTGACCGTTAAAACGCTGAGCAACAAAACGCTGTTCAGCATTTTTACAACAATGTCGCTAAAAGCACCAGCATCAACGTTTGTAAGACCCTTGTAAGTGGGGCTTTCACATTTATAAAGGCAtgcaggttttttgttttgttatatatagatagatatactagtatatttatataaatatctataaaacaaatgaaacaaaaacagagctcACAAACGCACAGGGCTCTCCATTGACAGTGTCTTCAGTCCAAAAGGCAAAGGATGTATGAAGGCAATCATAGAACACAttctgtgaaaaacattttctttttttggtctgGGGATACCTCGGCAATACTATCCCCACTGGAAAAAAAAGGGACCATTCATGCAGCAGTTTTAAACATCTCCGTAGAAAAGGCGAATAATAACAGCCAGGTACTCACTGAAGACAGAGCGCAAATACTGTTTCCTTCTCTTGATCCCGGAGTTTCTCATCTTGCGTCAAATACAAAGGCATGTATATATTCACTGCGCAGGCAATAAAGGCGAAAATGAAAGTAATGTTAAACCTTAGAAACAGCCGATTTGATTGCAGACTCTGTGCAGGCTCATTCACTCCCACtgtgactgtgttgtgtgtgctcaGTTTGGACCAGGAGTTTGCatcctcctccagctccagctTGGGGATCCTACGTCACTCGCATTGAGGGGCAGACTGTGTTTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105578 lncRNA upstream 272184 10690741 ~ 10690964 (+) False AMCG00021240
TU105577 lncRNA upstream 326879 10635396 ~ 10636269 (+) True G84627
TU105487 lncRNA upstream 601640 10279988 ~ 10361508 (+) True G84549
TU105473 lncRNA upstream 700695 10227905 ~ 10262453 (+) True G84536
TU105471 lncRNA upstream 737850 10225083 ~ 10225298 (+) True G84535
TU105619 lncRNA downstream 49407 11036581 ~ 11036826 (+) True G84662
TU105622 lncRNA downstream 152103 11139277 ~ 11139491 (+) True G84665
TU105623 lncRNA downstream 164002 11151176 ~ 11151438 (+) True G84666
TU105625 lncRNA downstream 182520 11169694 ~ 11169893 (+) True G84668
TU105638 lncRNA downstream 457657 11444831 ~ 11445150 (+) True G84681
AMCG00021240 mRNA upstream 243821 10470063 ~ 10719327 (+) True AMCG00021240
AMCG00021235 mRNA upstream 540744 10382430 ~ 10422404 (+) True AMCG00021235
AMCG00021232 mRNA upstream 607165 10344129 ~ 10355983 (+) True AMCG00021232
AMCG00021233 mRNA upstream 683997 10274489 ~ 10279151 (+) True AMCG00021233
AMCG00021227 mRNA upstream 884373 10067228 ~ 10078775 (+) True AMCG00021227
AMCG00021247 mRNA downstream 6610 10993784 ~ 11530471 (+) True AMCG00021247
AMCG00021245 mRNA downstream 805064 11792238 ~ 11819570 (+) True AMCG00021245
AMCG00021244 mRNA downstream 857335 11844509 ~ 11847471 (+) True AMCG00021244
AMCG00021254 mRNA downstream 1119140 12106314 ~ 12107507 (+) True AMCG00021254
AMCG00021248 mRNA downstream 1144021 12131195 ~ 12143466 (+) True AMCG00021248
TU105325 other upstream 1539729 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 2329738 8631727 ~ 8633410 (+) True G84301
TU104813 other upstream 3841911 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other upstream 3841911 7115381 ~ 7121237 (+) False AMCG00021150
TU104395 other upstream 6729392 4230972 ~ 4233756 (+) False AMCG00021114
TU105723 other downstream 1088171 12075345 ~ 12100707 (+) True G84749
TU106850 other downstream 5076426 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 5603007 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 5669470 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 5669470 16656644 ~ 16714038 (+) False G85787

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2585776 True 3907 TUCP 0.43 2 NC_050571.1 20248683 ~ 20252627 (-)