AMCG00021235


Basic Information

Item Value
gene id AMCG00021235
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 10382430 ~ 10422404 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021235
GATGTGGGCCCTTTTCTTCATCACTCGGACGTCACTGAGCGTGGAGTCTGCACACTGGCCATTCTGGATGGGGTTGATGAAGCGGTTCCTGAACTCTTTCACCGAGCCAAGGAGGTTCTCTTTGATGAAATTCACCATGCAGTGGTCTACAAAGATCAGAGAGACGCACCAAGATGGAATCCTTATCACTCAGGGACAGCTTGTGACGGAGGAGATGGTGGCGATAGCGTGTCTTTTTCGTCATCTCAAAATCAGAGTCTGAGCCTGAACCAGAAGCCTCTTCCTCTGGAGACATCAAACCGGggaattttaGAGCGTCGACTTCCCTTCTTGGCAGCTTCCAACTTGCTCAGGCTCTTGATTTCTTTCTCCAGGACTGCGTCCACTGTCGTCTGCTATATCAGAAGTGTCTACAGAGGAGTCTGCCATCTCAAAAAGTTCATCAGGGACAGAAGAAGGCACTGTGACGATATCCTTATCGAGAGAGGTTTCACAGGCCGGGGCAGAATCTGCCTCACCCTCACTGCTCCTTTCAGAGTCCCTCAAGCTCTTTTCTTTGGGTTCACTTTCTCCTTCCATGGGCTCTTCAACTTCTCCAGATTTCCAACGATGTTGTCCGAAAAAGTGGGGCAGCTGATGGACTGGGCCAGTAAAAGAGCAGTGATCCGCATGAATGGGGAGAAGTTTCGTCGGTTTGTGAAAGCACCACCAAGAAATTACTCTGTGGTGGTCATGTTTACAGCTCTGCAGCCCCAGAGGCAGTGTGGTGTGTGCAAACAGGCAGATGAAGAATATCAGATTTTGGCCAATTCCTGGCGTTATTCCAATGCCTTCACCAACAAGATCTTCTTTGCAACAGTTGATTTTGACGAAGGTTCAGATGTGTTTCATATGctgAACATGAATTCTGCTCCCACCTTCATGCACTTCCCCCCAAAGGGAAAGCCCAAAAGAGCTGACACCTACGAGCTGCAGGTGCGAGGCTTTGCGGCTGAGCAGATTTCCCGATGGATTGCCGACAGGACCGATATCAACtgCTTTGTCCTGATCATGACTTCGGGGCAGATGTGGAACCATATCCGAGGCCCGCCCTACGCCCATAAGAATCCAAACACTGGTCAAGTGAGTTACATCCATGGAAGCAGCCAGGCCCAATTTGTTGCGGAAACTCATATTGTTCTTTTGTTCAATTCTGCTGTCACCTTGGGAATGGTACTTTTGCATGAAGCTGCAACTTCTGATATGGATGTTGGGAAAAGGAAAATCATGTGTGTTGCTGGGATTGGCTTGGTAGTGTTTTTCTTTAGCTGGTTATTGTCGATCTTCAGAGCCAAATACCATGGATACCCTTATAGtttccttaTGAGTTAAGAGGGAACCACCAGCAAACAAGATGACAAGGACCTGGATCTGTGTGAAACGCTGCAATAGAGGCTCTCGACTGGTCTTTCATGTCTTTAATGTGTATGACGATTAAGCATTGGAACACTTGAACCAAATACTGAGATGTGCCTTAAAGTTTAAATGCGTGGCTGtgcatttaagtttttttttttatctgtatttttttttatttcctgttttttggATCCACGTGAGTTTTACGTCACGTTCTCAAACCATAGACTCTTGCCAGGCAGCTGTCCTTCAACAGTATACATATTCCCCAGAGCTCTCTGCAATAGCTGTCTGCCTTTTaagatgtactgtatttatgttACTGTTCCAAAGCTTTTGACTCCTGGAGGCTGGCTGTCAGTTGATGCTGAGGTCTCTAGTGGAATGGGTTTGTTGTTTGTGCCTAGTGTCTTCTGCACATGGTACATCAAATCATGTGATACAGTTtacagaaaaagaacaagattGAAACCAACCTCACATTCTAGGACAAGGCCCAGTCAGACCTTTGCTGCAGTATGAGTAAGATCAAACTGGCCGACCGGCCCATATGAATAACATCACTTTGCACTGCCCTCTTTATAAAAACTGTTTGGTCTacatctttgttttgctttataataGATAGGAAAGTTGTTTTGATTTAAGTATTTTGAGTACCTTTATGGCCAGCGTTTTAGGTTTTGTATGCAAGTCCCCCTACTCTTGCAAAAACGAAGAAACTTTACAGCATCAAAGCCAACTGACGCTTATTTTAGACTCTCAATTCTTGTAATTAGTTAAATAGTTTAAcaacttaattaaatattgaagcTCATGATGGACTTTTTCATTTGAGATAAAATAGAAGCTATGAAGTAGAAGTGATAGTTATGGATTATAATGTAAAGTTtgcagaatttaaattaattgattaaacgCTGTCTCCCAGAAATCCTGTTTTTCTATTCTAAGACTTCCAGAGCTTAATTTCTAAATACATCACTTGTATTTCATTCTGTTCAAGCACAGCAGcatttttacacagatttaGGAGAATAAACATTAGTTCAGAATGAACTATTCAGAGTTTTAAAGCATGGGCTTTAGGAAACTGCTGGTGCAGGCAGAAAAGTATCAAGTGAATTTGGTGAAGGGAGTTGTGTGTAAAGATTGCATTTCCCAGTTGTACCAGAAAATACTATCTTGCATATGTATCTAtgcttaaacaaaaacaaaagaatagtGTATATTAATACTACAACATcaaaagtttttatttcaattgaacTCCTAATGGTGAATAATACAGTTCTAATGCCGTACCAGGTACTGATTTTGTtcaatttgtaatatgttagcTGTAAAAGTTATTTTGGTAGGAATAAAAAACCAACACTTCATGACTTATTAATCCTGtgattcaaattattattttttagaatgtTTTGATTGGGTGtttaatatttcaacattttaaagtagtAGCTCTTCAGTCTTAAGCGTTAGATACTTGCAAGTTGTAAATGCTGAAAATGCACTATTTGAATTGAAGAccagaattaatttatttaatgtaaaataaccCCCTGCTATGAACAGTAGCTTTAATTTTCTCATGATTACATCCGATGGCCTTTTCCCACATTCAGTATCCATCACTTGTATAACTCGGCTGCTGTTCTCTGAGAGTTTCTGTTGTCCTTGAATTGGTCATGTCATTGAAACTCTTTCCACCCTCGGTGCAGTAGTGTGTTTTTTCTCCCGTGTGAGTGCTCGGGTGTTGTTTCAGGTTGGAAGACTCACAAAGCTCTTCTCTTGAGCCACTTAAATGGC

Function

GO: NA

KEGG:

id description
K19478 MAGT1; magnesium transporter 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021235 True 3213 mRNA 0.41 13 10382430 10422404

Neighbor

gene id symbol gene type direction distance location
AMCG00021232 fgf16 coding upstream 26447 10344129 ~ 10355983 (+)
AMCG00021233 upp,uprt,LOC105023903 coding upstream 103279 10274489 ~ 10279151 (+)
AMCG00021227 NA coding upstream 303655 10067228 ~ 10078775 (+)
AMCG00021229 NA coding upstream 337710 10044181 ~ 10044720 (+)
AMCG00021224 NA coding upstream 352847 10016520 ~ 10029583 (+)
AMCG00021247 NA coding downstream 571380 10993784 ~ 11530471 (+)
AMCG00021245 NA coding downstream 1369834 11792238 ~ 11819570 (+)
AMCG00021244 NA coding downstream 1422105 11844509 ~ 11847471 (+)
AMCG00021254 NA coding downstream 1683910 12106314 ~ 12107507 (+)
AMCG00021248 NA coding downstream 1708791 12131195 ~ 12143466 (+)
G84549 NA non-coding upstream 20922 10279988 ~ 10361508 (+)
G84536 NA non-coding upstream 119977 10227905 ~ 10262453 (+)
G84535 NA non-coding upstream 157132 10225083 ~ 10225298 (+)
G84495 NA non-coding upstream 372740 10006111 ~ 10009690 (+)
G84477 LOC108440084,LOC106603334,LOC103024645,LOC105026974 non-coding upstream 503563 9864686 ~ 9878867 (+)
G84627 NA non-coding downstream 212992 10635396 ~ 10636269 (+)
G84662 NA non-coding downstream 614177 11036581 ~ 11036826 (+)
G84665 NA non-coding downstream 716873 11139277 ~ 11139491 (+)
G84666 NA non-coding downstream 728772 11151176 ~ 11151438 (+)
G84668 NA non-coding downstream 747290 11169694 ~ 11169893 (+)
G84425 NA other upstream 959011 9416267 ~ 9423419 (+)
G84301 NA other upstream 1749020 8631727 ~ 8633410 (+)
AMCG00021180 NA other upstream 2339131 8040170 ~ 8043299 (+)
AMCG00021150 fundc2,LOC106603170,LOC107661711 other upstream 3261193 7111997 ~ 7121237 (+)
AMCG00021133 NA other upstream 3835829 6544234 ~ 6546601 (+)
AMCG00021240 LOC107742636 other downstream 47659 10470063 ~ 10719327 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other downstream 540744 10963148 ~ 10987174 (+)
G84749 NA other downstream 1652941 12075345 ~ 12100707 (+)
AMCG00021267 timm8a,LOC107593201 other downstream 3012903 13435307 ~ 13437408 (+)
AMCG00021296 NA other downstream 3593729 14016133 ~ 14033557 (+)

Expression


Co-expression Network