AMCG00021240 (LOC107742636)


Basic Information

Item Value
gene id AMCG00021240
gene name LOC107742636
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 10470063 ~ 10719327 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021240
ATGTTACGAAAACTGACGTACCTAAAACGTGTTGCCTATTTGTTTCCAGGAAAGCTGAATGTCCTGTTCGTCGTAGCGGATGATCTGCGCCCAACACTAGGCAGTTATGGCGACCCGATTGTGAAATCGCTAAACATAGACCAGCTGGCCTCCAAAAGCAGCGTCTTCCACAATGCGTATGCGCAGCAAGCTGTGTGTGCCCCTAGCAGGACTTCATTTCTGACCAGTCGGAGGCCGGACACTACCAGACTCTATGACTTCTATTCTTACTGGAGGGTCCATGCAGggaactacactacactgcccCAGTATTTCAAATCTAATGGCTACACCACCATGTCTGTGGGGAAGGTTTTCCACCCAGGCATTGCTTCAAATAAATCGGATGATTATCCCTATAGCTGGTCTATTCCTCCTTATCACCCGTCCTCTCTCCGTTATGAGAAACACAAGATGTGTAAAGGTAAGGATGGAAAACTACATGCCAACCTGCTTTGCCCAGTCGATGTGCGAGAAATGCCTGAAGGGATCTTGCCAGATATGCAGAACACAGAAGAAGCAGTGAAATTACTAAAATCTGTGAAAGATCAAGGCAATCACTTCTTTCTTGCGGTGGGATATTATAAACCCCATATACCATTCAGATATCCAAAGCAATTCTTAGAACTATACCCTCTAGAGAATATGACTCTAGCTCCTGACCCATTCATTCCCACTGGATTGCCAAGTGTGGCCTACAATCCGTGGACAGATGTCCGGAAAAGGGAAGATGTTCAAGCTTTGAATATCAGCTTTCCCTATGGGCCAATCCCCAAGGAATTTCAGATTCGCCAGAACTATTTTGCTGCCGTTTCCTACCTTGACTCTCAGGTGGGGAAGCTTTTAAATGTGCTGGATGAATTAGGCTTGGCCAATGAGACTATTGTGGTTTTTACTTCTGATCATGgCTGGTCTTTGGGTGAGCATGGGGAATGGGCTAAGTACAGTAACTTTGATGTAGCTACTCGGGTACCACTCATGGTTTATGTACCAGGACGCACCGCACCCATCCCAGAGCCTGGGACGAAAACCTTCCCTTATCTTGATCCCTTTCAGTACTCCTCTGAGAGGCACTACAAAGGGAAAGTGGTGAAAAATATTGTGGAGATGGTGGACCTGTTCCCCACAATCTCGGAGCTGGCAGGGCTGAAGGTGCCACACCGCTGCCCTCGACCCTCTTTTGATGTGGAGCTCTGTACTGAAGGATCTAGCATTGTGCACTACATGAAAACCTCTGAGAAGGACATGGATCCAGAGGCCATTGCTTACAGTCAATATCCCAGACCTGCAGATCTCCCACAACAGGACTCTGACCTTCCCTTACTCAAGGATATTCGCATCATGGGCTACTCCATCCGTTCCTGTGACTATCGCTACACTGTCTGGGTGGACTTCGACCCAGTCACATTTGTTGCAGACTTTGAACACTTGCACTCCGGAGAGCTTTATCTCGTACACAGCGACCCCAACCAGGATCATAATGTGTTCAACAAAACTGAATATGCCGGCGTCGTACACAAATTTATAATGCCCTGCAAAAAAAACCTAAAGAAATCACATCTTACAGCGACTGTCTTGGAATGTGAAGTTGACTTGCTTTCCCCTTTGCGGTGCTTGTGTGAGGAGGacgaggtggaggaggaggacaaaGGGAAGGAGATGACAGGGGGTAAGGTGCTGGTCAGCATGGTGCTGGCGAGTACCTCGGGAGTGGCACTGCGGGAGCCCTCGTTACACTCGCTGTCACTCGAGCTGCTCTCACTGTCCGAGTCCGACTCCGAGCTGCTCTCCGATTCGCTGGAGCTTCCGGAGGCTGCGCTGGAGTGGCCCGGCTCTCCCGCCCTAtcctTCTCAAGGTTTTTGAGCTCTGACCAGACAGACTGCTACCACACAGCTCTCAGGTCGGATACAGTGCAAGCTCTGAGGTGCACCGATGTGAAACTGCAACTGCTGCTGCCTCCGCGCCTTGCTGCCAGCTGTGGTTTATCTGCAGGCTTCGAGCCTTGCTATCTAACCTCCTGCCACCAGCGCTCGCTTTCggtaATCGGAGTTACCAGACAGAATACCAGCCGGACTGCCGAGCTGACACACGCAGGCAGAGAGACGCTCCAGCcccggctgctgctgctgctgctgccgctgcccTGCTGGCGGAGAGGCCGGCTCAATCGCGCACTGCTCGGGGAGGCGGAGCTTCAGGCTAGTGGGTAG
>TU105578
GCTCTAGTTCCCAGTCCCTAAAGAAGTCAAACTCGAATAAGTCCATGGTGGGTCCCCGCAGTCGGATTCAGTGAGGAGCCGGTGTGCGCTCACTGTCTGCGCCAGCCTGCATAGACAGACAgcaatggtgtgtgtgtttgtgtaactgTAGCCAGCCGGACTGCCGAGCTGACACACGCAGGCAGAGAGACGCTCCAGCcccggctgctgctgctgctgctgcc

Function

NR:

description
PREDICTED: iduronate 2-sulfatase-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway biological_process
GO:0060536 cartilage morphogenesis biological_process
GO:0009790 embryo development biological_process
GO:0005737 cytoplasm cellular_component
GO:0004423 iduronate-2-sulfatase activity molecular_function

KEGG:

id description
K01136 IDS; iduronate 2-sulfatase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021240 True 2250 mRNA 0.51 17 10470063 10719327
TU105578 False 224 lncRNA 0.59 1 10690741 10690964

Neighbor

gene id symbol gene type direction distance location
AMCG00021235 NA coding upstream 47659 10382430 ~ 10422404 (+)
AMCG00021232 fgf16 coding upstream 114080 10344129 ~ 10355983 (+)
AMCG00021233 upp,uprt,LOC105023903 coding upstream 190912 10274489 ~ 10279151 (+)
AMCG00021227 NA coding upstream 391288 10067228 ~ 10078775 (+)
AMCG00021229 NA coding upstream 425343 10044181 ~ 10044720 (+)
AMCG00021247 NA coding downstream 274457 10993784 ~ 11530471 (+)
AMCG00021245 NA coding downstream 1072911 11792238 ~ 11819570 (+)
AMCG00021244 NA coding downstream 1125182 11844509 ~ 11847471 (+)
AMCG00021254 NA coding downstream 1386987 12106314 ~ 12107507 (+)
AMCG00021248 NA coding downstream 1411868 12131195 ~ 12143466 (+)
G84549 NA non-coding upstream 108555 10279988 ~ 10361508 (+)
G84536 NA non-coding upstream 207610 10227905 ~ 10262453 (+)
G84535 NA non-coding upstream 244765 10225083 ~ 10225298 (+)
G84495 NA non-coding upstream 460373 10006111 ~ 10009690 (+)
G84477 LOC108440084,LOC106603334,LOC103024645,LOC105026974 non-coding upstream 591196 9864686 ~ 9878867 (+)
G84662 NA non-coding downstream 317254 11036581 ~ 11036826 (+)
G84665 NA non-coding downstream 419950 11139277 ~ 11139491 (+)
G84666 NA non-coding downstream 431849 11151176 ~ 11151438 (+)
G84668 NA non-coding downstream 450367 11169694 ~ 11169893 (+)
G84681 NA non-coding downstream 725504 11444831 ~ 11445150 (+)
G84425 NA other upstream 1046644 9416267 ~ 9423419 (+)
G84301 NA other upstream 1836653 8631727 ~ 8633410 (+)
AMCG00021180 NA other upstream 2426764 8040170 ~ 8043299 (+)
AMCG00021150 fundc2,LOC106603170,LOC107661711 other upstream 3348826 7111997 ~ 7121237 (+)
AMCG00021133 NA other upstream 3923462 6544234 ~ 6546601 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other downstream 243821 10963148 ~ 10987174 (+)
G84749 NA other downstream 1356018 12075345 ~ 12100707 (+)
AMCG00021267 timm8a,LOC107593201 other downstream 2715980 13435307 ~ 13437408 (+)
AMCG00021296 NA other downstream 3296806 14016133 ~ 14033557 (+)
AMCG00021292 NA other downstream 3350003 14069330 ~ 14073125 (+)

Expression


Co-expression Network