RNA id: AMCG00021248


Basic Information

Item Value
RNA id AMCG00021248
length 2839
RNA type mRNA
GC content 0.48
exon number 16
gene id AMCG00021248
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 12131195 ~ 12143466 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTGCCGATCAGGATTGATGGCTTATCTAGCCTATCACAATACAAGCTCGTAGATATTGTAACCAACCACAGGGCTGGGAAGGCGGGGTTTAGTCAGTCGAGGGACGGGGTCGGCCTTGTGCTCTGTGAGAAGGAGAGCTGACAAGATCTCGGCTCGGCGGTTTGGGGTCGGGGAGAGAGGTGGACTCGGTGTGCATTTGGCGGTGaactgtagtttgtttttcacttgtaGTGAGGCAGTGCCGGTGCCGGGGACATTGATCAAATATGTTGAAGTGCAGGGCATTCTGGCAGAAGCTAGCTCCATTGACGAGGAGCTCCTCCACGTTATGTGGAAAAAGCACTACCAGAGTTTTAAAATGCGAGAGCTCTGTGAGGACAATGCAGAAAGCCCGGATGTCATCTGGGCTCCCCAGAGGAAGTGGGGACAatattctatattttgtttttgtcggGGGGGCATTTCTTGGTGGAGGAGCATATGCATATAACCTTTTGAAAGGGGACAAGCAGAGGTACCAAGATCGAATTTCTGAGATTACCTCAAGAAAAAATAAGGAACGTGTGCTAGCAGAGGTTGAACCAGCGGAGCTGGTTTTGCCGAGTTCTGTGGAGGAGGTGGTGGTTTTAGCTGAAAACGTGAGCCCTGCTTTATCAGAGGGGCAGCCTCAGGAGCAGGACGTGGGGGCTGCTGTTGTTGAAGAGGCAGCCCCCGAGTCTCCCGGAGAGAGTTCCCAGCCCCCCGCTGCGGAACGGACAGCACTGGAAAGCAAAGCACCTTTGGATGTCTCTGAAGATCAAGAGTCTGCGCCCCTGTCAGAAACCGTCCCAACAGAGTCCATAGAGCAGCCCCCAACAGCCACAGCTGCCAGCGCTCCAGAAGATAGTCCTGCTGTGTCCCGCCCTGAAATCCCTCCTCATGCGCCTTATCTTCTGATTGGGGGTGGCACTGCCTCTTTTGCTGCTGCCAGGTCCATTCGAGCACGGGATCCAGGTGCCAGGGTATTGATAATCTCTGAAGAATCTAGTCTGCCATACATGCGCCCCCCTCTGTCCAAGGAGCTCTGGTTTTCTGACGACCCCAAtgtgactgacacactgcagtTTAAACAGTGGAACGGCAAAGAGAGAAGtatctATTTCCAGCCCCAGTCATTCTATGTCAAGCCTCAAGATTTACCTGAAGTAGAGAATGGAGGAGTAGCAGTTTTAAATGGCAAAAAGGTGCTGTACATGGATGTAAGAGGGAACAAAGTGACTCTGGATGATGGCACCGAAATATCCTATGATAAGTGCCTGATAGCTACGGCAAAAGACTCTAGTTTGGAAGTGAACCAGATGTTTCCTGAGAGGGGTAACATGGGGAAGGTGTTGCCAGAGTATCTCAGTAACTGGACCACTGAGAAAGTCAGAAGAGAGGGGGTTAACGTCATGCCAGAAGCCCTGGTGAAGTCAGTGAGCTATCAAGATGACAAGGTGGAAATAAAGCTAAAGGATGGCAGAGTGGTGAGGACTGATCACATCGTGGCCGCGGTGGGGCTGGAGCCCAGTGTGGAGCTGGCCAAGTCTGCGGGGCTAGAGGTGGACTCCGATTTCGGAGGGTTTAGGGTCAACGCAGAACTGCAGGCTCGCTCTAACATCTGGGTGGCTGGTGATGCTGCCTGCTTCTATGACATCAAACTGGGCCGACGGCGGGTTGAGCACCATGATCATGCCGTGGTGAGTGGCAGGCTGGCTGGGGAGAACATGACCGGAGCCAACAAACCCTACTGGCACCAGTCCATGTTCTGGAGTGATCTTGGGCCTGATGTGGGCTATGAAGCCATTGGGATTGTAGACAGCAGCCTTCCCACTGTTGGAGTTTTTGCCAAAGCCACTGCAAAAGACACCCCCAAAGCAGCTACGGAGGAATCTGGTACCGGAATCAGGTCAGAGAGTGAGACTGAGGCGGTAGCCAGTGGTGCCACCGTGCCAGCCAAGGTTCCCTCCATCCCAAAGGTACCAGAGCAGGGAGAGGACTATGGCAAAGGGGTCATCTTCTACCTGCGGGACAAAGTGGTGGTGGGCATCATACTGTGGAATGTTTTCAACAGAATGCCCATTGCCAGGAAGATTATCAAAGATGGAGAAGAGCATGCCGACCTCAATGAAGTGGCCAAACTCTTCAATATTCACGAGGACTAGAAGTGGGCTTGAAAATCTCAGATGTAACTAATTTAAGGACTTGAACTTTTAAAGGCTTTGTCACCTTTTTGGATTGGAATAATATTGACAAAAGTGCACCTGATAAGAGGGAGAGGAAAGATGCTTCATGCATGACAAGAATCTATTTTGTGTACGTTTTTCACTGTCTAAATTGGTCGATATGTTTGTAAAATTTATTAAATGAAGCCGGGTTCTTCTGAATATTCTATGAAAGTAAGTGTATATTAATTGAATAACATTTGATCAAAGtaatgaccccccccccccccccccccccccccccccaatcgtTAACGTACATATTGTGATGAAATTGTAAGAACAACAAAACCATTCAGGACTGTTTTCTTTCAAGTAATAATCTGGTGGCATTTTTTTTAGATCTTAGTGGATCTGTGTATCCTTGCAAGATCAGCCTCACTATGGCAAGAACAAACTTGAATAAAGAACACGCTATGGTTTTATAAATTGAATGAAGCCATcatgttttcaattgttttgcATGATTAATTCAGGAGTAActtaagtaaatatatacattcctTAACTTGAGAAACATGGATGTTTTGtatgcatgaaaaaaacaaaacatccaggTTGTggtcatgtatttaaattaaaaaatatattttcc

Function

GO: NA

KEGG:

id description
K04727 AIFM1, PDCD8; apoptosis-inducing factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105738 lncRNA upstream 29852 12101131 ~ 12101343 (+) True G84759
TU105648 lncRNA upstream 427195 11703795 ~ 11704000 (+) True G84691
TU105647 lncRNA upstream 439489 11691092 ~ 11691706 (+) True G84690
TU105638 lncRNA upstream 686045 11444831 ~ 11445150 (+) True G84681
TU105625 lncRNA upstream 961302 11169694 ~ 11169893 (+) True G84668
TU105792 lncRNA downstream 193336 12336802 ~ 12337139 (+) True G84801
TU105794 lncRNA downstream 194531 12337997 ~ 12338207 (+) True G84803
TU105821 lncRNA downstream 657363 12800829 ~ 12839209 (+) True G84825
TU105833 lncRNA downstream 912716 13056182 ~ 13061763 (+) True G84837
TU105892 lncRNA downstream 1291841 13435307 ~ 13437408 (+) True AMCG00021267
AMCG00021254 mRNA upstream 23688 12106314 ~ 12107507 (+) True AMCG00021254
AMCG00021244 mRNA upstream 283724 11844509 ~ 11847471 (+) True AMCG00021244
AMCG00021245 mRNA upstream 311625 11792238 ~ 11819570 (+) True AMCG00021245
AMCG00021247 mRNA upstream 600724 10993784 ~ 11530471 (+) True AMCG00021247
AMCG00021240 mRNA upstream 1411868 10470063 ~ 10719327 (+) True AMCG00021240
AMCG00021255 mRNA downstream 42543 12186009 ~ 12195780 (+) True AMCG00021255
AMCG00021256 mRNA downstream 298749 12442215 ~ 12449758 (+) True AMCG00021256
AMCG00021262 mRNA downstream 1214792 13358258 ~ 13377435 (+) True AMCG00021262
AMCG00021264 mRNA downstream 1259168 13402634 ~ 13407007 (+) True AMCG00021264
AMCG00021265 mRNA downstream 1276346 13419812 ~ 13433529 (+) True AMCG00021265
TU105723 other upstream 30488 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 1144021 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 2707776 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 3497785 8631727 ~ 8633410 (+) True G84301
TU104814 other upstream 5009958 7115381 ~ 7121237 (+) False AMCG00021150
TU106850 other downstream 3920134 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 4446715 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 4513178 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 4513178 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 4854411 16997877 ~ 17004131 (+) True G85869

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060231 False 2443 mRNA 0.49 16 NC_007116.7 22550617 ~ 22573673 (-)