AMCG00021255


Basic Information

Item Value
gene id AMCG00021255
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 12186009 ~ 12195780 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021255
ATGACGACTGCAGTCCAGCCGAGTGAACTGGTGTTCGAGTTCGCCAGCAATGGAATGGATGAGATTCATCAGCTGGACGACCCCTCGGTGTTCCCTGCCGTGATCGTGGAGCAGGTCCCTGCGGCTGACCTCATGCAGGTCTACTCCGGCCTGGAGTCTGACGAAGTGCCCAATGGGATCATGGCCGACACATCACTGGATGTGGCTGAGGAACAGATCATGGGAGGAGACATTGGGCTAACAGTGGAGTCCTCAGGCCCGGACACAGAGGATAATATGGAGACAATAGAAGCGGCTGAGGCACTTCTCAACATGGAGTCACCCAACAACATCCTGGATGAGAAACGCATGATCCACAGCTATGGGAACTTGCTGGACTCTGAGCTCACGTACATCTCCCTGCGGCCAGAGCAGCTCCCCAGCCATGGCAACGGGGTGGACGTGTCGTTGGATGAGGAGGAGTCCATGGACGAGATCCAACCCAAGAGTCCCACCAAGCcgcagagaaaaaacaaagTCCGCAAACCCAGAACAGTACGTCCCTGTTCCCCTGTCACAACCCCCAGCCTCCCACTGAGGAAGAAAAGCAAGGATGGGAAAGGAAACACAATCTACCTATGGGAGTTCCTCCTGGCCCTCCTGCAAGACAAGAACACCTGCCCCAAATACATCAAATGGACTCAGAGGGAGAAGGGGATCTTCAAATTGGTGGATTCCAAGGCTGTGTCCAAGCTGTGGggcaaacacaaaaacaagcccGACATGAACTACGAGACCATGGGCCGAGCACTGAGGTACTACTACCAGCGGGGCATCCTGGCCAAGGTGGAGGGGCAGCGGCTGGTGTACCAGTTTAAAGAGATGCCCAAGGACCTTATTGTGATCGACGACGAGGACAACCAGGGGTCTGACTCCAGCCCTGGCCACGGAGGGACCCACTCTACCCCCCATGGTAGAGCTCAATCCCGGGGGATATCCCGCGCCAGCCAGGGCAGGACTGCTGGCCAGCCAGTACTGGTGCGGCCCATGAAGAGGGAGCAGAGCCCAGGGGTGATGTACCAGGGAGTGAACGGCAGGCAGTCGGATCAGCTGGTTCAGACTGTGCATGTCCTTCAGCCTAACCAGGGCGCTGCGGTCCCAGCCTCAGCTCACACTGTCCGGACCATCAATGTGCCAGCCTCTGTCCAAGCCACGGTGCCCATGGTGCTGACTTCGGGGGCTCAGGGAGGGGGCACTGTTACTCTGCAGACTGTGCCCCTCACCACCGTGCTGGCCAACGGGGAGACAGCCCACACCTCCTCTCAGAGGGTCATTCTGCACACAATGCCCTCCTCAACGCCTGGGATAAAAGACATGATGACCTTCCAGACTGCGTCTTTGACTTCGATCCCAAGCAGCCTGGCTGACGGTCCCCAGCCTCCTCAGCTCCTGGTCACCAGCCTAGGCTCCTCCTCAGGCGGGGTGATCAACACCACTGCCCAGTCCAGCTCCTTGAATGGCATCACCCGCCTGGTCACAGTCAATGCCAACGGGCAGCCCGTTGTGGCTCAGCAGCCTGGCACCGTCATCGCCACAGTGCTTAAGCCCAGCGAGTTCAACGGCATCGAGGTGAAAGAGGAGATCTTAGACTCCCAGTACTTCCAGTCTCTAGTCAATCCCTCTGCACATGCCAGTTACGACGAGAAAGAGCTCTCGCTGGATGTAGGGGGAGCGGAGATCGGCTACAGAACCGTCATCATCGGGAGTGGCACTCACGATCCAAGCCAGGGCTTTGAGAGCAAGATCAACGGACACTCGGGATCGTCTGAGCCAGGAGACCAGAGCAGCCAGCTGAGCAGCAGTCCCACCGTGGGCCTGACGCCCGTGGAAGAGCTGGAGGTGAATGGGGAGTCTGCCTTGGAGTGTGAGCACAGATCCAAGCAGCTGGACACGGCCCTGCACGAGCTCTCCCAAGGCATCACCGAGGTCCAGCAGCTGCAGCTCGCGGGGTGCCAGCCCGTGACTGTCCAAGTCACAGCCTCCCACTTCAGCCCTGTACAGATAAAGACAGAGCCTGTGGACACATAA

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09428 ELF1_2_4; E74-like factor 1/2/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021255 True 2067 mRNA 0.58 8 12186009 12195780

Neighbor

gene id symbol gene type direction distance location
AMCG00021248 NA coding upstream 42543 12131195 ~ 12143466 (+)
AMCG00021254 NA coding upstream 78502 12106314 ~ 12107507 (+)
AMCG00021244 NA coding upstream 338538 11844509 ~ 11847471 (+)
AMCG00021245 NA coding upstream 366439 11792238 ~ 11819570 (+)
AMCG00021247 NA coding upstream 655538 10993784 ~ 11530471 (+)
AMCG00021256 NA coding downstream 246435 12442215 ~ 12449758 (+)
AMCG00021262 LOC101466695,LOC100711741,LOC108231179,LOC106514543,LOC106949970,LOC106920031 coding downstream 1162478 13358258 ~ 13377435 (+)
AMCG00021264 NA coding downstream 1206854 13402634 ~ 13407007 (+)
AMCG00021265 NA coding downstream 1224032 13419812 ~ 13433529 (+)
AMCG00021263 taf7l,taf7 coding downstream 1247005 13442785 ~ 13447518 (+)
G84759 NA non-coding upstream 84666 12101131 ~ 12101343 (+)
G84691 NA non-coding upstream 482009 11703795 ~ 11704000 (+)
G84690 NA non-coding upstream 494303 11691092 ~ 11691706 (+)
G84681 NA non-coding upstream 740859 11444831 ~ 11445150 (+)
G84668 NA non-coding upstream 1016116 11169694 ~ 11169893 (+)
G84801 NA non-coding downstream 141022 12336802 ~ 12337139 (+)
G84803 NA non-coding downstream 142217 12337997 ~ 12338207 (+)
G84825 LOC107690093,LOC107593228,LOC107740173,LOC107680956,LOC107554828 non-coding downstream 605049 12800829 ~ 12839209 (+)
G84837 NA non-coding downstream 860402 13056182 ~ 13061763 (+)
G84923 NA non-coding downstream 1375991 13571771 ~ 13572447 (+)
G84749 NA other upstream 85302 12075345 ~ 12100707 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other upstream 1198835 10963148 ~ 10987174 (+)
AMCG00021240 LOC107742636 other upstream 1466682 10470063 ~ 10719327 (+)
G84425 NA other upstream 2762590 9416267 ~ 9423419 (+)
G84301 NA other upstream 3552599 8631727 ~ 8633410 (+)
AMCG00021267 timm8a,LOC107593201 other downstream 1239527 13435307 ~ 13437408 (+)
AMCG00021296 NA other downstream 1820353 14016133 ~ 14033557 (+)
AMCG00021292 NA other downstream 1873550 14069330 ~ 14073125 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other downstream 3232697 15428477 ~ 15432364 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other downstream 3867719 16063499 ~ 16073621 (+)

Expression


Co-expression Network