AMCG00021256


Basic Information

Item Value
gene id AMCG00021256
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 12442215 ~ 12449758 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021256
ATGTCCTCCAAGGAAATGGATTTGATACAATTTCTTTTGCTGGCTCTTCTCTGCTGGTCCTGGGCCGATGCTGTGATCAATTTGAAATACTCGGTGGATGAGGAGCAGAGAGCAGGGACTGTGATCGCTAACATCGCCAAGGACGCCAAAGATGCCGGGTTTGTAGTTGATCCCCGGCAGCCCTCCCTGCGGGTCATCTCCAATTCTGCGCCACACTTGGTGGACATTAACCCCGCCGGACTGCTGGTCACGAAACAGAAAATCGACCGGGATATGGAGCAGAGGGACACCTATAACTTGACCATCCAAGCCGAAGATAGTGGCGTCCCTTCTCTGAAAACCACCAAATCATTCACAGTGAAAATCACAGACGAGAATGACAATCACCCCCATTTCTCCAAGCCGATTTACCAAGTCATTGTCCAAGAAAACAACACCCCGGGGGCTTACCTTCTCTCCGTGTCAGCCAGGGACCCCGACCTGGGCTTGAACGGCAGCGTGTCCTACCAGATCGTGCCATCGCAGGTCAGGGACATGCCCATTTTCACGTATGTGTCCATAACCCCCAACACAGGGGACATCATCGCCCTCAGtggagaggtGCGCACCACCCGGATGTTTGGGGAGAACGCAAAGACCACCTATGAGATCACCGTGGTGGCGCACGACCACGGCAAGGTGTCTCTGTCGGCCTCCGCCTTTATTGTGATCTACCTCTCACCCGACCTGGACGCACAGGAGTCTATAGGACCCGTCAATCTGTCCCTCATCTTCATCATTGCCCTGGGCTCCATTGCTGCCATCCTGTTTGTCACAATGATCTTTGTAGCAGTGAAGTGCAAAAGGGACAACAAGGAAATCCGAACCTACAACTGCAGGGTGGCGGAGTACTCCTATGGCAACCAGAAGAAATccaacaagaaaaagaagatcAGCAAGAACGACATCCGGCTGGTGCCTCGAGACGTGGAGGAGACTGACAAGATGAACGTGGTGAGTTGCTCGTCTCTCACCTCCTCGCTCAACTACTTCGACTACCACCAGCAGAGCTTACCACTGGGCTGCAGGCGCTCCGAGAGCACCTTCCTCAACGTGGAGAACCAGAATTCGCGCAATGCCGCCCCCAACCACGGCTATCACCATACCTTCACCGGCCAGGGGCCACAGCAACCTGACCTCATCATCAACGGCATGCCGCTGCCAGAG

Function

GO:

id name namespace
GO:0048854 brain morphogenesis biological_process
GO:0001841 neural tube formation biological_process
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021256 True 1206 mRNA 0.54 4 12442215 12449758

Neighbor

gene id symbol gene type direction distance location
AMCG00021255 NA coding upstream 246435 12186009 ~ 12195780 (+)
AMCG00021248 NA coding upstream 298749 12131195 ~ 12143466 (+)
AMCG00021254 NA coding upstream 334708 12106314 ~ 12107507 (+)
AMCG00021244 NA coding upstream 594744 11844509 ~ 11847471 (+)
AMCG00021245 NA coding upstream 622645 11792238 ~ 11819570 (+)
AMCG00021262 LOC101466695,LOC100711741,LOC108231179,LOC106514543,LOC106949970,LOC106920031 coding downstream 908500 13358258 ~ 13377435 (+)
AMCG00021264 NA coding downstream 952876 13402634 ~ 13407007 (+)
AMCG00021265 NA coding downstream 970054 13419812 ~ 13433529 (+)
AMCG00021263 taf7l,taf7 coding downstream 993027 13442785 ~ 13447518 (+)
AMCG00021266 LOC107740154 coding downstream 998838 13448596 ~ 13454852 (+)
G84803 NA non-coding upstream 104008 12337997 ~ 12338207 (+)
G84801 NA non-coding upstream 105076 12336802 ~ 12337139 (+)
G84759 NA non-coding upstream 340872 12101131 ~ 12101343 (+)
G84691 NA non-coding upstream 738215 11703795 ~ 11704000 (+)
G84690 NA non-coding upstream 750509 11691092 ~ 11691706 (+)
G84825 LOC107690093,LOC107593228,LOC107740173,LOC107680956,LOC107554828 non-coding downstream 351071 12800829 ~ 12839209 (+)
G84837 NA non-coding downstream 606424 13056182 ~ 13061763 (+)
G84923 NA non-coding downstream 1122013 13571771 ~ 13572447 (+)
G84936 nox1,LOC106611713 non-coding downstream 1150447 13600205 ~ 13601928 (+)
G84938 NA non-coding downstream 1154100 13603858 ~ 13604159 (+)
G84749 NA other upstream 341508 12075345 ~ 12100707 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other upstream 1455041 10963148 ~ 10987174 (+)
AMCG00021240 LOC107742636 other upstream 1722888 10470063 ~ 10719327 (+)
G84425 NA other upstream 3018796 9416267 ~ 9423419 (+)
G84301 NA other upstream 3808805 8631727 ~ 8633410 (+)
AMCG00021267 timm8a,LOC107593201 other downstream 985549 13435307 ~ 13437408 (+)
AMCG00021296 NA other downstream 1566375 14016133 ~ 14033557 (+)
AMCG00021292 NA other downstream 1619572 14069330 ~ 14073125 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other downstream 2978719 15428477 ~ 15432364 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other downstream 3613741 16063499 ~ 16073621 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000000_08122662_08157008 PCDH19 coding CI01000000 null 8122662 ~ 8157008 (+)