AMCG00021263 (taf7l,taf7)


Basic Information

Item Value
gene id AMCG00021263
gene name taf7l,taf7
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13442785 ~ 13447518 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021263
GGGAAGGTAGGATCCAAGAACAAAGATGACGCCCCACATGAACTGGAGAGTCAGTTCGTCCTTCGTCTGCCTCCGGAATACGCCTCGACGGTGCGGAGGGCAGTGCAGTCTGGGAGTCTCAATCCCAAAGACAGGCTCACTGTAGAGTTGCACGCCGATGGCCGCCATGGTATAGTGAGAGTGGACCGAGTTCCTCTAGCTTGCAAGCTGGTTGACCTTCCTTGCATTATTGAGTCATTGAAAACTGTGGATAAGAAGACCTTTTACAAGACTGCAGATGTTTGTCAGATGCTGGTGTGCACAGTAGATGGGGATCTGTACCCTCCATTAGAAGAGCCCACTGGTGCTGTGGaccccaaaaacaaaaagaaggaCAAGGACAAAGACAAGAAGTTTGTATGGAACCATGGCAtCACCTTTCCTCTTAAGAACACCAGGAAAAGAAGATTCAGGAAAACTGCAAAAAAGAAGTATATTGAGTCCCCAGATGTAGAGAAGGAAGTGAAGAGACTGCTCAGCACAGATGCAGAAGCTGTCAGTGTCCTAGTAGCCTGTGTAAGTAGCGTGCCGATGAATGTTGAGTTTACCTTGACCACACGGGGGGCCGCAGGGTGGGAAGTGATTGCTGAGGATGAGACCAAGGAGGCCGATAATCACGGGTCCTTGGCCAACCTGGACTCATCTCCAGGGACATCTGGACACAAGCTCAGCCACGGGTCATCAGTGCAAAGGGATGAGCTGCGGGAGATCTTCAAcgacatcagcagcagcagcgaggATGAGGAAGACGAAGGGGACCGGCATGAGGACGAAGATCTCAACATTATGGACACCGAGGAGGACCTTGAGCGCCAGCTGCAGGAGAAACTGAATGAGTCAGACGGGCAGCGCGACGAGAGCGAGGGCAACAACCAGATAGTTCTAGAGTACCAGGTCCAAATCAACAATGTGAAAGCCAAGCTACAGGAGACACAAGAGAAGAAGAAACATCAGGAAGAGCTGATTATGAAGGTGGAGAACCAGGCCCTCAAGAATCGTTTCCAGGCTCTGCTGAATGAAATCGTTAGTCAAGAAGAACGGGAGATGGAA

Function

symbol description
taf7 Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to act upstream of or within transcription initiation from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF7 (TATA-box binding protein associated factor 7).
taf7l Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to act upstream of or within flagellated sperm motility and spermatid development. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex.

NR:

description
PREDICTED: transcription initiation factor TFIID subunit 7-like

GO:

id name namespace
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0006413 translational initiation biological_process
GO:0005669 transcription factor TFIID complex cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03132 TAF7; transcription initiation factor TFIID subunit 7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021263 True 1089 mRNA 0.51 10 13442785 13447518

Neighbor

gene id symbol gene type direction distance location
AMCG00021265 NA coding upstream 9256 13419812 ~ 13433529 (+)
AMCG00021264 NA coding upstream 35778 13402634 ~ 13407007 (+)
AMCG00021262 LOC101466695,LOC100711741,LOC108231179,LOC106514543,LOC106949970,LOC106920031 coding upstream 65350 13358258 ~ 13377435 (+)
AMCG00021256 NA coding upstream 993027 12442215 ~ 12449758 (+)
AMCG00021255 NA coding upstream 1247005 12186009 ~ 12195780 (+)
AMCG00021266 LOC107740154 coding downstream 1078 13448596 ~ 13454852 (+)
AMCG00021277 NA coding downstream 139376 13586894 ~ 13599015 (+)
AMCG00021276 NA coding downstream 175331 13622849 ~ 13630470 (+)
AMCG00021275 NA coding downstream 202745 13650263 ~ 13662469 (+)
AMCG00021279 NA coding downstream 245850 13693368 ~ 13704090 (+)
G84837 NA non-coding upstream 381022 13056182 ~ 13061763 (+)
G84825 LOC107690093,LOC107593228,LOC107740173,LOC107680956,LOC107554828 non-coding upstream 603576 12800829 ~ 12839209 (+)
G84803 NA non-coding upstream 1104578 12337997 ~ 12338207 (+)
G84801 NA non-coding upstream 1105646 12336802 ~ 12337139 (+)
G84759 NA non-coding upstream 1341442 12101131 ~ 12101343 (+)
G84923 NA non-coding downstream 124253 13571771 ~ 13572447 (+)
G84936 nox1,LOC106611713 non-coding downstream 152687 13600205 ~ 13601928 (+)
G84938 NA non-coding downstream 156340 13603858 ~ 13604159 (+)
G84962 NA non-coding downstream 233419 13680937 ~ 13685245 (+)
G85006 NA non-coding downstream 414152 13861670 ~ 13862498 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 5377 13435307 ~ 13437408 (+)
G84749 NA other upstream 1342078 12075345 ~ 12100707 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other upstream 2455611 10963148 ~ 10987174 (+)
AMCG00021240 LOC107742636 other upstream 2723458 10470063 ~ 10719327 (+)
G84425 NA other upstream 4019366 9416267 ~ 9423419 (+)
AMCG00021296 NA other downstream 568615 14016133 ~ 14033557 (+)
AMCG00021292 NA other downstream 621812 14069330 ~ 14073125 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other downstream 1980959 15428477 ~ 15432364 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other downstream 2615981 16063499 ~ 16073621 (+)
G85764 LOC103366846,LOC106930986 other downstream 3142663 16590181 ~ 16592973 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000000_07895431_07902576 TAF7, TAF7.L, TAF7L coding CI01000000 null 7895431 ~ 7902593 (-)