RNA id: AMCG00021247



Basic Information


Item Value
RNA id AMCG00021247
length 990
RNA type mRNA
GC content 0.53
exon number 17
gene id AMCG00021247
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 10993784 ~ 11530471 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGATTCGACCAGATTCACAGCACCAGACCAAACAGATCTACAATACAGAGTTCAAAGGTtacttcatcatcatcatcatcatcatcatcatcatcatcactTTAAGTGGGTCACTGCCGCTCAGgGCTGACAGCTTCTCATTTCCCCGAAGATGGTCTAGGaTAAAGAAACAAGCTGACCACAAGGAGACAGGCTTGTCCCATGACTTTGTAACCGTCCTGCCGTACCTTTCGTCTCCCCACTCGGATTCTGACCTCTCCGCCGAGACCTGCAGTGCTTGCTCTTGCATGTCCATCGAAAATGTCCTCTATGTGAACTGTGAGAAAATCACCGTGTACAGACCCACCCAACTGAAGCCCCCCCCCTCCAACCTatattctGAGAACCAGCCCAACTGGGAAAGATTAAGCTGCTGTGCCATTGAGAAGGGAGTGGGGACCTTCACCTTTTCTCAGGAGAAGATTGCTATGGAAGATAATAAGCCCATATTTCAACTGTCCGAAACATCTTCCCAAGCTCATGGCTTAAAGCAGGTGAAGAGGCTTGTGGCAGAAATCACTCAGTTCAATGTAATTGACCACAATCAGAGCCACGGAGGCGACGCAGGGGATCCGCAGACAGGCGCTGCTGCCAGCAGTGACTGGAGCGAGCATTCACAAGGAGCCGGACAGGAGCCCGTAGCCCGGAGCCCACCGCAGCATGGCGGGATCTCACGGCACGGAGGGGAGGCGGGGGGCACCCGACTCCTCTCCATCCATTACCAGGTGCTTTCGGCAGCGGTCAAGCGTGCGGTCATCTCCAGCTCTCAGGATCCCTGGTTGAAGAGGCGGGTCTCCCCCCCTTCTGTCCTGCCACCACAGGATACCTGGCTCTTCCTCGTCTCGATCATTTGGATCCATGGTGCTCCTGGCAGGAACTTGAACACCAACTACTCCTTCAAcGACTATGCCACCCCTAGGGGGAAGCCTGCAATCCAGGCCaagatttaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU105578 lncRNA upstream 302820 10690741 ~ 10690964 (+) False AMCG00021240
TU105577 lncRNA upstream 357515 10635396 ~ 10636269 (+) True G84627
TU105487 lncRNA upstream 632276 10279988 ~ 10361508 (+) True G84549
TU105473 lncRNA upstream 731331 10227905 ~ 10262453 (+) True G84536
TU105471 lncRNA upstream 768486 10225083 ~ 10225298 (+) True G84535
TU105647 lncRNA downstream 160621 11691092 ~ 11691706 (+) True G84690
TU105648 lncRNA downstream 173324 11703795 ~ 11704000 (+) True G84691
TU105738 lncRNA downstream 570660 12101131 ~ 12101343 (+) True G84759
TU105792 lncRNA downstream 806331 12336802 ~ 12337139 (+) True G84801
TU105794 lncRNA downstream 807526 12337997 ~ 12338207 (+) True G84803
AMCG00021240 mRNA upstream 274457 10470063 ~ 10719327 (+) True AMCG00021240
AMCG00021235 mRNA upstream 571380 10382430 ~ 10422404 (+) True AMCG00021235
AMCG00021232 mRNA upstream 637801 10344129 ~ 10355983 (+) True AMCG00021232
AMCG00021233 mRNA upstream 714633 10274489 ~ 10279151 (+) True AMCG00021233
AMCG00021227 mRNA upstream 915009 10067228 ~ 10078775 (+) True AMCG00021227
AMCG00021245 mRNA downstream 261767 11792238 ~ 11819570 (+) True AMCG00021245
AMCG00021244 mRNA downstream 314038 11844509 ~ 11847471 (+) True AMCG00021244
AMCG00021254 mRNA downstream 575843 12106314 ~ 12107507 (+) True AMCG00021254
AMCG00021248 mRNA downstream 600724 12131195 ~ 12143466 (+) True AMCG00021248
AMCG00021255 mRNA downstream 655538 12186009 ~ 12195780 (+) True AMCG00021255
TU105614 other upstream 6610 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 1570365 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 2360374 8631727 ~ 8633410 (+) True G84301
TU104813 other upstream 3872547 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other upstream 3872547 7115381 ~ 7121237 (+) False AMCG00021150
TU105723 other downstream 544874 12075345 ~ 12100707 (+) True G84749
TU106850 other downstream 4533129 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 5059710 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 5126173 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 5126173 16656644 ~ 16714038 (+) False G85787

Expression Profile