RNA id: AMCG00021233


Basic Information

Item Value
RNA id AMCG00021233
length 1350
RNA type mRNA
GC content 0.47
exon number 7
gene id AMCG00021233
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 10274489 ~ 10279151 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAGGCGCTGTGATGGACTGCAGTTGCAGCCACTCAGGGAGCAGCTCGTCCCAGGGAGCAAACATCCTGTTTCTCAGTTGCACTTCCTCTCCAGGCACAGACTGCCAGTGACGAGTGCAGTTACATCCATGGCCGAGGGGACACGTTATTTTATGTGTTGATATCTTTGAAAGCCAGCTGGACGTCGGTAGACAACACGGGCACCAGTTTCTGTTCTATGGAAACGTATTTTGACTGCGGTATCGCCACTGATAAGACCATGCCTTGCCAGAACCAGCAGCTCAACAACAGTGCCAACCAGGAGCATGCTGTGTTGAGCAGCACCAAGCAGGTCAGGTTTGCGAGCAATAGCAATAGTGGCATCTCAGCACTTTCCAACGGGGAAGTAGAGGAAATCACTGAAACGGGCGAAACTGACATCAACAACGAAATACTCCAGGAGATCGGATCGCAGTTGAAACTACTCCCTTTGAATGACCAAATCCGAGAGTTGCAGACCATCATTAGAGACAAAACAACCAGCAGAGGGGACTTCGTATTTTGTGCTGATCGACTGATCAGACTAGTGGTGGAAGAAGGACTCAATCAATTACCATACAGTGAGTGCACAGTCACCACACCCACAGGGCACAAGTATGATGGGGTCAAGTTTGAAAAGGGCAATTGTGGTGTCAGTATCATGAGAAGCGGCGAAGCGATGGAGCAGGGGCTGAGAGACTGCTGCAGATCCATCCGCATCGGCAAGATCCTCATCCAGAGCGATGAGGAGACTCAGAAAGCCAAAGTGTACTATGCCAAATTCCCCCCAGACATTTACAGGAGGAAGGTTCTGCTCATGTACCCGATACTCAGTACTGGTAATACAGTGATTGAAGCGGTCAAAGTGCTCATAGAACACGGCCTACAACCTAAACATATCATACTGCTCAGCCTCTTCTCTACACCTCATGGTGCAAAGTCAATCATACAGGAATTTCCAGAAATCACAATCCTGACCACCGAGGTACATCCTGTGGCCCCAACACATTTTGGACAGAAATACTTTGGCACGGATTAGCAAGTGAGGTATTTGTGTTGCAAATGCCATCAAATATATCCTGTTGACTGTCTGTTTTACGTTTGTTGCTCTTAAAGAGAAGCTTTGTTGACTTGCGGTGCCATTTTGTGGATCTACTCTTTATGCCTGATCTTATATCAATTACTCTGGAACATAGCCAAGCATTTCTCAAAAAGCACATTCCACACGAGTCTCAGAAAATGGTGTGCTTGTATGGATTGCTGAGTGCTGTATGCCGTCATCGTATTTATTGGTTTGGGAGACCTTTTGTAGTTTGTtgctttacattaaaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105473 lncRNA upstream 12036 10227905 ~ 10262453 (+) True G84536
TU105471 lncRNA upstream 49191 10225083 ~ 10225298 (+) True G84535
TU105424 lncRNA upstream 264799 10006111 ~ 10009690 (+) True G84495
TU105395 lncRNA upstream 395622 9864686 ~ 9878867 (+) False G84477
TU105397 lncRNA upstream 405981 9864686 ~ 9868508 (+) True G84477
TU105487 lncRNA downstream 837 10279988 ~ 10361508 (+) True G84549
TU105577 lncRNA downstream 356245 10635396 ~ 10636269 (+) True G84627
TU105578 lncRNA downstream 411590 10690741 ~ 10690964 (+) False AMCG00021240
TU105619 lncRNA downstream 757430 11036581 ~ 11036826 (+) True G84662
TU105622 lncRNA downstream 860126 11139277 ~ 11139491 (+) True G84665
AMCG00021227 mRNA upstream 195714 10067228 ~ 10078775 (+) True AMCG00021227
AMCG00021229 mRNA upstream 229769 10044181 ~ 10044720 (+) True AMCG00021229
AMCG00021224 mRNA upstream 244906 10016520 ~ 10029583 (+) True AMCG00021224
AMCG00021225 mRNA upstream 270487 9975043 ~ 10004002 (+) True AMCG00021225
AMCG00021226 mRNA upstream 327006 9947160 ~ 9947483 (+) True AMCG00021226
AMCG00021232 mRNA downstream 64978 10344129 ~ 10355983 (+) True AMCG00021232
AMCG00021235 mRNA downstream 103279 10382430 ~ 10422404 (+) True AMCG00021235
AMCG00021240 mRNA downstream 190912 10470063 ~ 10719327 (+) True AMCG00021240
AMCG00021247 mRNA downstream 714633 10993784 ~ 11530471 (+) True AMCG00021247
AMCG00021245 mRNA downstream 1513087 11792238 ~ 11819570 (+) True AMCG00021245
TU105325 other upstream 851070 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 1641079 8631727 ~ 8633410 (+) True G84301
TU104813 other upstream 3153252 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other upstream 3153252 7115381 ~ 7121237 (+) False AMCG00021150
TU104395 other upstream 6040733 4230972 ~ 4233756 (+) False AMCG00021114
TU105614 other downstream 683997 10963148 ~ 10987174 (+) True G84657
TU105723 other downstream 1796194 12075345 ~ 12100707 (+) True G84749
TU106850 other downstream 5784449 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 6311030 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 6377493 16656644 ~ 16661882 (+) True G85787

Expression Profile