RNA id: TU104395


Basic Information

Item Value
RNA id TU104395
length 2785
RNA type TUCP
GC content 0.37
exon number 1
gene id AMCG00021114
representative False

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 4202711 ~ 4233797 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acaaaacacaacatcttGTCATgattgacattttgtttgtttgctttactaTTAATAGTTTTCAGTCATATTTGCCTTTTCCCCTTGCTCTGTGGGACGGGTCACGTACACTAGAGGACTGTCATTCTGTACtttcatttgttaattattatttgtatttatatttatctgtgGAGTTGAAAGCTACAGAATTCTGATGAGACAAGTTATGGAATTGTGAAAGGAGTAAATgtgttctatatttatttgaatttcaataattattttactccAAGTGTGAAAAGGCTGACGCTACCCAGTCCTGTCCGTGGAGCCTGCACACTCTGGCGCTCAGCGCGCCGACAGTCCTGGGTGTTGTTCGCCTCTCGTTCTCGTTTCTCTGTCATATTTATTCGATTGACCGTGATGTCGTGTGTCGGGGGGTAAAGGTGGTGAAGTTGCACTTGTTAACCGTGTTTCACTGTTATTGTGtgcaatgtcatttttcagaaacaagaatgtttaatttataatttctaCAGGATGTTTATAAAGCAGATCTGTATTCAagtaaaataacagaattaaCCTAAACCAGTTACTGTAAACAAGattgaaatatttttgtatagaaATATCTGAAACATTCCTAATACCACGTATTGGCTAGAACTGTACACAGTGACATTTTGTACCGCATGGTAATTGaaagttgttattttattgcataattTGGTAATCCTTACATTACAAAGTCCATCTTTACGATGATGTAAAGTGTAGGCCTCTTAAtgatcatattaataatactgtGAAAATCATCTCATCAACATTTGATGCCTGTTCTTTGAAGTATAATcggtttgtttttgtagaaCAATTGAATTGACCATGTGACGTCAATATGCCTGTTTATTACAGTGTATCCTTAACAATGGAGCAGGTTAACAGCTCATATTAGAACAGTTCTGAGGAATTCATCTGAGTGTAATCTGGTTAGAATATGAACTTGCCTTCCTTGCATCGTCTAATATCAGATGCCAGTTTAAAGTACACTCCGCATTGTCTAGTTGTTCTGTTACATACAACTAACGTGATTGAAAAAAATGGATCTAATGTGCAATAATGCAAACTGTTTAGAGGAAACAATCCTGATCAGGAATCATCTCTCAAATAGACTTGAATTCAACAACGCAGCTGACTGTGTAGCAGACTGAAGCGTGTACATGGGCCGTGCTCTGCTCTGGGTCGAGCTTCCAGACAACAGAACCACGTTTACCTCGGCTCTGACCCACAATCGGCACCAGTTTCACACAACTAACACTAGGACTGGGTGTTAAACGTACAGTCAGAGACACTGGGGCTATATGCACTGAACACTTTGATTTGTCAAACATAAAATGAGTGACTGCCACCATAACATTCAAGTGAGAAATACAGAGCTGAAATGTGCAGTCTTTACAAAATCCAGGTCTGTTTAAACTTCTGAACCCAAATACACTATTGAGATCCAGACTGAAAGATTCATtagttctatttatttttgctcctctcaatttaataattttaaccAGTTATCCCCTAATTGCTGATAATATGAGCTGTCAGTCCTGCAGTTGtaaattgtttatataaaatattatattaaaataatgtattgaatcGGTTCTAAAGAAACACCCAAACTAGCTAAACTCAGTTACAGTACTTTTCCATGACAGGACACATGGAACACGTGACACATGCCAGttctttacaaaatgttattctAGATCATAACCAATGCCATGGAAACATTTGTAGAATGGAACCCTAAGGAATGGAAAGTATTCATTGTTGTTGATTTAAGTTTGGCTCGTTTTGATGGGTGGACTGCAGTATTGTGCGCTTGTACCCTCACTGTGCAGTTTCTGGGTTTTTTGCACGTTCAGCAAATGAGACTGTTGTTGCTGAAGCCGATGTGTGTTTGCTTTGAATCGCTTCAGTCgttaatattgttgttattattcctTATTCTTATGTCactgtttcttttgtatttgtttaattgtgatttCTCAGATACAGCAAACGGTACagatgtgtgcgtgtttgtttcTAAATCCCTACCGTTACAATATGCACTTTTACTTGGAGTTTCAGGGCCCTGTTTATTGACGATTCCCttcacaattgtcattattttttgtaatcaagGACAAAAATCAGCTCCCAAACATGGATGGAAATAGTGCTCTTTAGCCCCCCGTCTCGGGTTGCACTTTCCCCATTCAGACCGATTGCTACTTGTTTGGTCGCTATCATTGTCATTCACTCTTGGgtgaagaaaacagaaaaatgagGCTGGTGATGTGTGTGTaactaaaaacagaaagctGGTACAAACTTACAGCCATTTCTGCCAAAATACAGCAGAATATACCTTGTAGATATGTATTATACgatgtacaaaaataatttagaagaaatagtttattttatatgacGTACAATAGATTTATAAATGTTCTATgatttaaaagagaaacaaaatatatgtattttgtaacagATTTATTATTGAAGTGTCTTATGGGGAGGCGCAGTCTTTCTATCCTTGAGTTCTGCAAGTTGGTGTTGCACAAAACCCAAGACAGGCGTTGGACGGCTTGTCTGTCACTGTACAGGTCCATCACAATAAGCTTTAAcatattgttaatattgttttaaaaaagaaatacaagtttACATTCTGAAGCAGTTTGGAAATTAACTCTGTGACAGTATTTTACAGTGCTATTAAAAGACTTTTGGACAATTCATCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104360 lncRNA upstream 295017 3935696 ~ 3935955 (+) True G83645
TU104335 lncRNA upstream 435361 3795344 ~ 3795611 (+) True G83623
TU104334 lncRNA upstream 435730 3794989 ~ 3795242 (+) True G83622
TU104333 lncRNA upstream 441726 3789027 ~ 3789246 (+) True G83621
TU104226 lncRNA upstream 876686 3353985 ~ 3354286 (+) True G83528
TU104422 lncRNA downstream 28245 4262001 ~ 4265982 (+) True G83704
TU104425 lncRNA downstream 28245 4262001 ~ 4265982 (+) False G83704
TU104432 lncRNA downstream 46352 4280108 ~ 4286600 (+) True G83710
TU104445 lncRNA downstream 58370 4292126 ~ 4292364 (+) True G83716
TU104481 lncRNA downstream 400980 4634736 ~ 4730944 (+) True G83741
AMCG00021113 mRNA upstream 101599 4127070 ~ 4129373 (+) True AMCG00021113
AMCG00021112 mRNA upstream 315328 3906153 ~ 3915644 (+) True AMCG00021112
AMCG00021107 mRNA upstream 386683 3841600 ~ 3844289 (+) True AMCG00021107
AMCG00021108 mRNA upstream 421957 3804211 ~ 3809015 (+) True AMCG00021108
AMCG00021101 mRNA upstream 457664 3762081 ~ 3773308 (+) True AMCG00021101
AMCG00021124 mRNA downstream 505385 4739141 ~ 4751627 (+) True AMCG00021124
AMCG00021123 mRNA downstream 518423 4752179 ~ 4760646 (+) True AMCG00021123
AMCG00021126 mRNA downstream 610995 4844751 ~ 4848172 (+) True AMCG00021126
AMCG00021127 mRNA downstream 657493 4891249 ~ 4894563 (+) True AMCG00021127
AMCG00021128 mRNA downstream 1535411 5769167 ~ 5787583 (+) True AMCG00021128
TU104390 other upstream 101756 4127271 ~ 4129216 (+) False AMCG00021113
TU104336 other upstream 432189 3797841 ~ 3798783 (+) True G83624
TU103781 other upstream 3304497 918006 ~ 926475 (+) True AMCG00021049
TU104813 other downstream 2881625 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other downstream 2881625 7115381 ~ 7121237 (+) False AMCG00021150
TU105166 other downstream 4397971 8631727 ~ 8633410 (+) True G84301
TU105325 other downstream 5182511 9416267 ~ 9423419 (+) True G84425
TU105614 other downstream 6729392 10963148 ~ 10987174 (+) True G84657

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU25569 True 6193 lncRNA 0.36 2 NC_035899.1 14258784 ~ 14265054 (-)