RNA id: AMCG00021113


Basic Information

Item Value
RNA id AMCG00021113
length 1493
RNA type mRNA
GC content 0.49
exon number 3
gene id AMCG00021113
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 4127070 ~ 4129373 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGACTCTCTTCTGCAGTCTAGCGGTGAAAGCGTTTGTGTGGCGCAGATGTGCTCGGATGTGACCAGGTCTGCGCTCCTTCTCCAATGGGATatgtgggattctgcagatctgcgcagaactgcgtaGATATGTGCAACACAGGCGCGACCTCCGGCTGCGCCGAGGCTGGCGGAAGTGGTCAGAGCGCCCGTGTCATGTGATCTGCTCCAGGAAGTGGCGCGTCCCGCAGGCTGTGTTTCTGACTCGGGTTGAGCTGCGGGCTGGTCACTGTGTCCCGGCTGAGAGACGGGCAGGCGGACATGGAGAGGTTTGACAAGACGGCGCTCAACGCGGCCCCGGGTCCGGCCCCGGACTTCAGAGGCAATGACGGCTCGCTGGTCTCTGCCCTGAAGACTCTTCTCTTCTTTACTATCCTGATGGTCACTCTACCCATAGGACTGTATTTTGCAACGAAATCGTATGTATTTGaagccTCCATGGGCATGTCCAGTAACGACAGCTACTTCTACGCGGCCATCGTGGCGGTGGTGGCCGTGCACGTGGTGCTGGCCCTGTTTGTGTACGTCGCCTGGAACGAGGGATCCCGGCAGTGGAGGGAGGGGAAGCAGGACTAACCGCCAGCTGGGTTTCTTTTTCGGGAAGACGACGCCTGGGAAAGAACATGGAGGGAGGACACTGAACCGACCAGCCAAGAGCCGAAAAACAGAATATCGTGTGCCTCCAGACTGGAAACTGGGGTTGCTGCACAAACAGAGGGTTCAGTCCGGCTGGTGTTGGTAGCGTTCAGGTTGTTTAATCGCGATGCACAGGAAGCTGTGCTCGTTTGTGTgtgaatcttttaaaataacgGCAACGCAACCAAATAGTGGTGACACTACACAGTACAGTGTGCAGGACAGGGCTTCTCATAACGTCTGAAGATGTCAGCGCTTCTCAAACAACCCGGATCTCCCCAGCCACTAACACGAGCAAACGTGGCATCAAACCTATTCGATCTTGAAATGCATGTCCTGTAatggtgatttttgtttttgctgttagTTAACCTCCTGTAAGTGTTTAACTGTACGACTGAGTGTCGCTGTATTTCCTCCCCAGTTGCTTTCTACAATTAGAAACGATTTAGAATTTAAAGAACAATGAAAAACCCTGCAGTTACTCTCTGGGATCTCAATTAATGTttcaaatggtttgtttttaagtgtgtttttaatttataaagtaaaataataaacacatttaaatatggtGAGTAGTGTTTAATTAGGTCCTGGACACACACGTGTAAATGACgtattttgaatattaataaaataagtttcggaagttaaaatgttctgttcCTGTATGTTGCTGCAGGCTGTTTCAATTCACTTGAATGTGGACGGTCAGgggcacacacacaatacacgcaatacacaataaacatgcaatacacacaaaacacacaatacagacacactcttTGAACCCAGAGTGTATTAGAGGAG

Function

GO: NA

KEGG:

id description
K23952 VMA21; vacuolar ATPase assembly integral membrane protein VMA21

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104360 lncRNA upstream 191115 3935696 ~ 3935955 (+) True G83645
TU104335 lncRNA upstream 331459 3795344 ~ 3795611 (+) True G83623
TU104334 lncRNA upstream 331828 3794989 ~ 3795242 (+) True G83622
TU104333 lncRNA upstream 337824 3789027 ~ 3789246 (+) True G83621
TU104226 lncRNA upstream 772784 3353985 ~ 3354286 (+) True G83528
TU104422 lncRNA downstream 132628 4262001 ~ 4265982 (+) True G83704
TU104425 lncRNA downstream 132628 4262001 ~ 4265982 (+) False G83704
TU104432 lncRNA downstream 150735 4280108 ~ 4286600 (+) True G83710
TU104445 lncRNA downstream 162753 4292126 ~ 4292364 (+) True G83716
TU104481 lncRNA downstream 505363 4634736 ~ 4730944 (+) True G83741
AMCG00021112 mRNA upstream 211426 3906153 ~ 3915644 (+) True AMCG00021112
AMCG00021107 mRNA upstream 282781 3841600 ~ 3844289 (+) True AMCG00021107
AMCG00021108 mRNA upstream 318055 3804211 ~ 3809015 (+) True AMCG00021108
AMCG00021101 mRNA upstream 353762 3762081 ~ 3773308 (+) True AMCG00021101
AMCG00021106 mRNA upstream 366180 3758599 ~ 3760890 (+) True AMCG00021106
AMCG00021114 mRNA downstream 73338 4202711 ~ 4233797 (+) True AMCG00021114
AMCG00021124 mRNA downstream 609768 4739141 ~ 4751627 (+) True AMCG00021124
AMCG00021123 mRNA downstream 622806 4752179 ~ 4760646 (+) True AMCG00021123
AMCG00021126 mRNA downstream 715378 4844751 ~ 4848172 (+) True AMCG00021126
AMCG00021127 mRNA downstream 761876 4891249 ~ 4894563 (+) True AMCG00021127
TU104336 other upstream 328287 3797841 ~ 3798783 (+) True G83624
TU103781 other upstream 3200595 918006 ~ 926475 (+) True AMCG00021049
TU104395 other downstream 101599 4230972 ~ 4233756 (+) False AMCG00021114
TU104813 other downstream 2986008 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other downstream 2986008 7115381 ~ 7121237 (+) False AMCG00021150
TU105166 other downstream 4502354 8631727 ~ 8633410 (+) True G84301
TU105325 other downstream 5286894 9416267 ~ 9423419 (+) True G84425

Expression Profile