RNA id: TU105623



Basic Information


Item Value
RNA id TU105623
length 263
lncRNA type intronic
GC content 0.49
exon number 1
gene id G84666
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 11151176 ~ 11151438 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gggctcagataacagcacacagcacgaggtccgtgtggttggaacaaaggcagtcctgttcggctttgtccaagaacttccactcagtcgatgcacctggaagttggggtttcgcgaaagtagagtcgtttccaaacagattttccactggtttgaaggctccaaggttgtgcacaaaatcttctttgtaagcTGGGGTTCCACCGTacttacttgaagacaaagtctttgaggaaagcagggccctgtttgttcCAAGGGTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU105622 lncRNA upstream 11685 11139277 ~ 11139491 (+) True G84665
TU105619 lncRNA upstream 114350 11036581 ~ 11036826 (+) True G84662
TU105578 lncRNA upstream 460212 10690741 ~ 10690964 (+) False AMCG00021240
TU105577 lncRNA upstream 514907 10635396 ~ 10636269 (+) True G84627
TU105487 lncRNA upstream 789668 10279988 ~ 10361508 (+) True G84549
TU105625 lncRNA downstream 18256 11169694 ~ 11169893 (+) True G84668
TU105638 lncRNA downstream 293393 11444831 ~ 11445150 (+) True G84681
TU105647 lncRNA downstream 539654 11691092 ~ 11691706 (+) True G84690
TU105648 lncRNA downstream 552357 11703795 ~ 11704000 (+) True G84691
TU105738 lncRNA downstream 949693 12101131 ~ 12101343 (+) True G84759
AMCG00021240 mRNA upstream 431849 10470063 ~ 10719327 (+) True AMCG00021240
AMCG00021235 mRNA upstream 728772 10382430 ~ 10422404 (+) True AMCG00021235
AMCG00021232 mRNA upstream 795193 10344129 ~ 10355983 (+) True AMCG00021232
AMCG00021233 mRNA upstream 872025 10274489 ~ 10279151 (+) True AMCG00021233
AMCG00021227 mRNA upstream 1072401 10067228 ~ 10078775 (+) True AMCG00021227
AMCG00021245 mRNA downstream 640800 11792238 ~ 11819570 (+) True AMCG00021245
AMCG00021244 mRNA downstream 693071 11844509 ~ 11847471 (+) True AMCG00021244
AMCG00021254 mRNA downstream 954876 12106314 ~ 12107507 (+) True AMCG00021254
AMCG00021248 mRNA downstream 979757 12131195 ~ 12143466 (+) True AMCG00021248
AMCG00021255 mRNA downstream 1034571 12186009 ~ 12195780 (+) True AMCG00021255
TU105614 other upstream 164002 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 1727757 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 2517766 8631727 ~ 8633410 (+) True G84301
TU104813 other upstream 4029939 7115381 ~ 7121237 (+) False AMCG00021150
TU105723 other downstream 923907 12075345 ~ 12100707 (+) True G84749
TU106850 other downstream 4912162 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 5438743 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 5505206 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 5505206 16656644 ~ 16714038 (+) False G85787

Expression Profile