RNA id: TU106557


Basic Information

Item Value
RNA id TU106557
length 1483
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G85381
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15257959 ~ 15259462 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCACTGAAACAATACAGAAACTAAACTGCGTcatagaaaatagtttttcatttattataacCAACAGACACAATACAGACCGCCGTTTCCAATAACTACAACTAACAATAATTCCGTATCGGTAATTTATCCACAGGAAATTCAGTATTACTTAATGAATACTGTGCAATGTTTCTTCAAAGGCTTTTAGTTGTGACTGTGTGAAACTGCACCTTAGAACCTGTGATGCTCAGTTTATTTATGATGGGTTCCACTATggctattattagtagtaatcaCACTGAAGTACAGGACAAaacatttgttctgttttttgaaaaaaaaaatagttttgacacagtaaacatttaataaacaccCAGcacaattcatatttataattatacttatctgtatgtgtgcctatatatacacaattttattaaacttcATTATAACACCACAACCATGAGTAGATATGTTATTACAACAGCAAACTCTGAAATTcacatattaaaaaagtattcatACCCCTATCTAAAAGAACAGacatgttaaatattattttttatcatttaaatacacaacaacaactaaactaGATGTCATGTCCAGGGTGTTTTACAATAACCTTTTATTAATCAGACTCCCTCTGCTTACAGATAAAGTACAGTCATCCTGAGGTAATTTTACCGTGAAGCTCTGTGGACAGCATGAGTTCTCTAACTGCTTTTACTACATgctttactgcattttattgtgtattattttatggCAAGTAAACTGGGTCACACATTGGGCCAGAAACATTGTAGTGAACTGTGTACACAACACACATGCAGCTAAAATGGCACAATACAATAACTAGCCTTTTGTTACAAGTTAAATCTAGTGAGTGAAGCTACTATATTGCAGATTGAGGGGACAGCAGTAAGCCATATGAAGTGCATGGTTGGGGCTATACCTACATGTAAAGGCATGCATGCAAGtatgtgcatatttaaatgcatgtaaacacacacccatttgattttaatgcaaatgtggCTATGCACCCAAATTGTATTGTAACAGAGCTCATGCTCACAATATATAAGGATAGAGATTAACAGTTTTTAATGATTCAGGATTTTCAGACAAGTTTAGCACAATTTGTGCAAagtatatatcaaataaaaagatCAAGAACCAAGTGAATACTATAAAGCTGGAGACAGCCACATCTATCACACAGGGCTAGGGGTATTGCAACAGCATGGCCTTCCTATAAGAGGCAGCCTGCATTCTCTAGAGCAGGTGAAGGTGTTCAAACCCCCAGCTGTGTGAATGCAggctacaaaaaatatataaatatctaacttaaaaaaataataatattaaccaTACCCAGTAAAGCTCCTATCCGCTATTAAATATGACAAACTttcaaatacacatatttataaaaacagcCCTACACACTGCATTGTGTGCCTCCAGCTCACCTGATTTGTTCATAAGGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106508 lncRNA upstream 129994 15127289 ~ 15127965 (+) True G85345
TU106507 lncRNA upstream 130726 15126767 ~ 15127233 (+) True G85344
TU106330 lncRNA upstream 762110 14456628 ~ 14495849 (+) True G85202
TU106304 lncRNA upstream 884402 14372720 ~ 14373557 (+) True G85185
TU106180 lncRNA upstream 1105416 14109527 ~ 14152543 (+) True G85098
TU106605 lncRNA downstream 146314 15405776 ~ 15410610 (+) True G85412
TU106595 lncRNA downstream 169015 15428477 ~ 15432364 (+) True AMCG00021349
TU106624 lncRNA downstream 186849 15446311 ~ 15566826 (+) False G85426
TU106641 lncRNA downstream 227780 15487242 ~ 15529672 (+) True G85440
TU106625 lncRNA downstream 255991 15515453 ~ 15566826 (+) True G85426
AMCG00021340 mRNA upstream 67868 15157183 ~ 15190091 (+) True AMCG00021340
AMCG00021337 mRNA upstream 103055 15150163 ~ 15154904 (+) True AMCG00021337
AMCG00021339 mRNA upstream 134996 15121710 ~ 15122963 (+) True AMCG00021339
AMCG00021335 mRNA upstream 215881 15038966 ~ 15042078 (+) True AMCG00021335
AMCG00021333 mRNA upstream 374871 14880963 ~ 14883088 (+) True AMCG00021333
AMCG00021348 mRNA downstream 65997 15325459 ~ 15335662 (+) True AMCG00021348
AMCG00021346 mRNA downstream 94294 15353756 ~ 15380123 (+) True AMCG00021346
AMCG00021349 mRNA downstream 169061 15428523 ~ 15431448 (+) False AMCG00021349
AMCG00021350 mRNA downstream 209041 15468503 ~ 15474502 (+) True AMCG00021350
AMCG00021354 mRNA downstream 287819 15547281 ~ 15553002 (+) True AMCG00021354
TU105723 other upstream 3157252 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 4270785 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 5834540 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 6624549 8631727 ~ 8633410 (+) True G84301
TU104814 other upstream 8136722 7115381 ~ 7121237 (+) False AMCG00021150
TU106850 other downstream 804138 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 1330719 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 1397182 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 1397182 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 1738415 16997877 ~ 17004131 (+) True G85869

Expression Profile