AMCG00021317


Basic Information

Item Value
gene id AMCG00021317
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 14321885 ~ 14339956 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021317
ATGGACGATTTCATCTGTAATATGAAAGATCTGACCGAGCAGCTGGTACAGAAACAGACCCCGGAAAACGCGAATGACGTCATCGAGAAACTGTTCAGTGAGGCGTCGTGTTTGGATGGCGTCACGTTAGTTACGACGTCAGAGGCTCAGGTGGAAGACTGTGCCATAAAACTGTGGAACTGGGCAGTAACCAAACATGTGGGCACAGCCATCACTGAGGAGCAGAGGGCAAAAGTACGCCACGTGGCCTGCAGATTGGCGTATGCATATGAGACCAAAGACCCATCGGAGGGAGCCATTCGTAGGCAGATTCTAATGGCCATTAAGACTGGAAGAACATGGCTAGACAGTAAGAAACCCGACCTGGCTGATGTCTTCTTCAGTCTCTCTGTCAAAagCCTAGAGGTATTGTACAGCAGACTGATAGCCCGGGGTGATGGAAAGGCAGATATAAACATTGCTAAAACAGATGTGGAAAAGGACCTTTTCAGAGTGCACTCCTATCAGGCTGAGTCTGCAGTGGTACAGGGGAACCACCAGGAGGCAGTGTCCTGTATGCAGCGCTGCAAGGACATGCTGCTTCGGCTGCCGAAGGAGGCCAAAGTCCTGAGACTCCTAGctactgtttattttgaatgggaTTGTAAGCAGTTCCAGGAAAAGGCCCTCAATGCAGTCACCTTAGCAAACAAGGAAAATGTGCATGCTGCAGGCATCTACCTAAAAATCCAGATCCTTCTGAAGAGTGGAGCTCAGGATGAATCAATGAAAGCAGCAATAACTGCGCTTCTTGATGTAGAGGTTCCTCTTGAGCTGTGTCTGAGCACTGTGAAAGTGCTAATGGCTGAAGACAGAGAGGCACTAGCATTTGAGTTCCTGAAGAGGGTGATCAAGCACTACGAGACATCTCCCGAGCTGGGCAGCGCCCTGGTGCTGCACATAGAGCTGCTACTGCAGAGAGGGAAGGAGCTGCTGGGGAAGCAAAAGATAGGGGACGTCATCACAGGCACTGTCACTACACTGGCAAACAGCTGTCCCCACAGATACTTGGCCATTTACACCTTTTGCTCTGGGACAGAGCTTCCAAAAACTTTGAGGAACTATTCTGAGTCTCTGCAGTGGTATAACTACTCGCTGAGTTTCTATTCAGCGGGCCAAATGGATCAGAACCTGGCCAAACTGCAGAGGAATCGGGCTTCGTGCTTCCTACATCTCCAGCAGCTAGACAAGGCTAAGGAGGCTATAAAAGAAGCTGAGAGGTGTGACCCAGAGAGTATTTTCACACAGTTCAGTGTGTACAAGATTGCTATTCTTGagaacaacacagagagagcTTTAGAGGCTGTCAAAACAATGGGGAAACTGGCAGAGAATCCCATTCAAAATGAGAACAGACTCCTGGTGGCTGAGAATGCAGCCTCCAACCTGCTTAGTCTAGCAGCACAGATTGCTCTAGAGaatgAACAGCAAGATGTGGCCATGAAGGCCCTCAGATGTCTGTGTGAGCACTCAGAGGACAGAGGACAGAAGGTCTCTCAGCTCAGCCCTGCGGAGGGCCTTAGTGCAGAGAAGAAATCTGAAGAGGCAAACTGGTTCAGGAAAATTGCTTGGAACTCAGCCCTACAGTGTGAGAGCTCTCCGGACATGATGAGGGATTTCTTTATGCTTTCGTATCAGCTTTCCCAGTTCTGCCCATCTGACAAAGCCATTCTCATTGGACAGAAGACCTGCCTCCTCATGGCAGCAGCTGCTAGCCTAGAACTAGGACGGGAGTCTTCTGAACTGTCACAACAGTCTGAGAGGCTGACCCAGGCACTGGAGCACATACAGGCCTGTTGGGAGATCTGGAAAACACTAAAAGCTTCAGggGAGTTCTCCAAGGATcccactgacacactgctgctCCTGTATGAGTTTGAAGCTCGAGCCAAACTGAATGATCCCAGACTGGAGACAGTGCTGGAGTCAGTGCTGGAGCTGCAGCAGATTGAAATTAAAACCCTGGAGACCATTGCATCCTTGGCAATGGAGCCTCCTGCTTATTTCCCCTCCCTGTGTAAGAAGGCCTTGAGGATCGCCTTATCTCTGCACAAGAAACGCCCCGATGCAGACCTGTCACGCTGCAGccaGTGCCTGCACAGCCTGATCCAGCTGTCCCTGCCCACAGGGGTGCTTGAGGTGGAGCCGTGGGTGCTGGAGGAAGTATGGGGGTACTACGAGGAAGCCCTCTTCATCATCGGCAGCGCTGGAGAGTTTCCTGAAGTGGAGATCCTGTGGCTGCTGACCAGGGCTTGGAACACAGGGATCCTACTCTACAGCCTGGCCCAGTACCCAGAGGCCGAGAAATGGTGTGGGCTTGGGATGAGCTTCCTTCGTCACCTGGGCACCCTGCAGGAGAGCTACCAGACACAGatgtCAGGTCTCTATGCTGAAGTTCTGGACAGGTTAGACAGAGCTAAGAGAAATCTCATTATCGAGGAATGA

Function

GO: NA

KEGG:

id description
K24574 TEX11; testis-expressed protein 11

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021317 True 2484 mRNA 0.51 25 14321885 14339956

Neighbor

gene id symbol gene type direction distance location
AMCG00021312 NA coding upstream 124213 14179178 ~ 14197672 (+)
AMCG00021305 NA coding upstream 204619 14110458 ~ 14117266 (+)
AMCG00021306 sept6,LOC106611514,LOC107664349 coding upstream 215945 14080550 ~ 14105940 (+)
AMCG00021295 upf3b,LOC102779784 coding upstream 253493 14063972 ~ 14068392 (+)
AMCG00021293 NA coding upstream 265904 14053219 ~ 14055981 (+)
AMCG00021322 pdzd11 coding downstream 150177 14490133 ~ 14493431 (+)
AMCG00021323 NA coding downstream 192826 14532782 ~ 14552790 (+)
AMCG00021324 NA coding downstream 218173 14558129 ~ 14561490 (+)
AMCG00021329 sox2,sox3,LOC105029621,LOC106604738 coding downstream 255324 14595280 ~ 14596188 (+)
AMCG00021331 atp11c coding downstream 331296 14671252 ~ 14690119 (+)
G85098 slc25a5,LOC107378486,LOC104931197,LOC107748177,LOC105925769 non-coding upstream 169342 14109527 ~ 14152543 (+)
G85090 NA non-coding upstream 286223 14034215 ~ 14035662 (+)
G85069 NA non-coding upstream 319466 14000596 ~ 14002419 (+)
G85056 NA non-coding upstream 357661 13963109 ~ 13964224 (+)
G85019 NA non-coding upstream 421904 13896919 ~ 13899981 (+)
G85185 dlg3 non-coding downstream 32764 14372720 ~ 14373557 (+)
G85202 NA non-coding downstream 116672 14456628 ~ 14495849 (+)
G85344 NA non-coding downstream 786811 15126767 ~ 15127233 (+)
G85345 NA non-coding downstream 787333 15127289 ~ 15127965 (+)
G85380 NA non-coding downstream 916492 15256448 ~ 15260965 (+)
AMCG00021292 NA other upstream 248760 14069330 ~ 14073125 (+)
AMCG00021296 NA other upstream 288328 14016133 ~ 14033557 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 884477 13435307 ~ 13437408 (+)
G84749 NA other upstream 2221178 12075345 ~ 12100707 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other upstream 3334711 10963148 ~ 10987174 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other downstream 1088521 15428477 ~ 15432364 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other downstream 1723543 16063499 ~ 16073621 (+)
G85764 LOC103366846,LOC106930986 other downstream 2250225 16590181 ~ 16592973 (+)
G85787 NA other downstream 2316688 16656644 ~ 16714038 (+)
G85869 NA other downstream 2657921 16997877 ~ 17004131 (+)

Expression


Co-expression Network