G85019


Basic Information

Item Value
gene id G85019
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13896919 ~ 13899981 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU106071
aaaaaaaaaaaaaaggaaatttaaaaacagcaagTGTGCAAGTGAATTCTTAACATACATTACAAGAGAtccataaaagaaaaacaacaaaatacaaaatgccttCAGGGCTGCTAAAAACAATCAGTATGGAGAAATCTCCCAAAAGAGTTGTCCAAGGTAATTCAGAGTTCTGTCAAGTCAGAGAGGACTACACTGTACCTATACAGTAAGACCCTGTAGTTTGGTAAACACATGGATTGCATTTCTTCATAACTGTAACAGGTAGAACTGCATCTGCAGGCTATACTTCCTTGTACAGCCAAAGGTTACCAGTGGGAAGGTTACCAGTCATGGAAAGGAAAGTGAAAGGAAATTGGATTAAAGGCTCCTGCTTTGATTTTCACAACCACTAACGTATGGACAGTAAGCACTGGACACTCCTGTGTGATGCCAAAGTAAGGTATAGACTAGTGTTGTCCGAGTACAACTAATGTACAGGAGAGGTAGTGTATGAGAGAATGGGAGGAGATTTACCCATGTTGATTTATGGAGCGTGAGACTTTGGAAAAGGTAGGTTAGGAATAAAAAGCTGGAGTACACTTAATTTCTCTAGGATGAGGGCAAGGAAGTCTGGCGAGGGAGATTATTATgggatggtgtttttttaacacacaatgCGGAAAtaatttagtgttttgttttctattagaGATTGGCATGGTCGGCTGATTTCCTCAGACTGATGCATGTGGAAAAAGGAGTGCTAAACTGCTGGCAAGACAACCAATGATGACTGACAATGTTTGGTTTGCAAGCAAGAGAGACGTTTGACTGAACATGGCCGATACTCCAACCTCAAACCAACAGGAAATGTTAGGCTTCAGTACAAATTGACAAAAAACTGTAGCAGAAGCACATTCCAACTCAGAGCTATCTTAGGAAATATCTGTGTTAAAGGGCAGTGTTTTAAAGAGAACAAATGCACATATAGCATTCTACTGTAGCCTCTTCTAACTTTAACATTACCAACATAGCTTCATGCATATTCAGCTGCCGATACAATACTCTTGGTCAAACAGCACACCGGCGGCCGTTTTCATCGCAGTCCTGGGAATgtagttcatttaaaagctttAGGAAAACAGGCACTATGATCGCAACAGTGATTTCATTCATCTTTCTATAGACTTTCCTCTACAGGCTCAAGATtattagcttttattttatcaggatttgatCTTTTCACACTGGTGACAGTGCACAGTAAAGCCCACACATTAGCCTACCATAGCCCACTTGTATTTCCCATATCTGACACACAAGCTTGTTGAGTAGCATTTGAAGTCTTCTTTTGGGTGGAACCAGGAAAAGGCATTAAAAACGAACACACgtaaacaaataatttttctttttttccttagGTAGTCTTTAACGTACCATTTATATGACACACAACCCTAAGGATAAATACAGACATTATTGGGTGATTAACAGCACAATTTTACATCACACAGAAGGACAATGGAGACAGCAGCACTATGTACAACAGAGCTTAAGACTTCAGGGCCGCGTGGCATGCCGCTTTGCTTTTAGTGTGCATTTCTGAAGGAAAAGAACGGCCTGCTAATGCAAAAGAGAGACAGCATGTGTAAACTGAAGGGGAGAGCACTCTCATGTGGATTGATAAACAATGCCCAGGTTTACAAGAGGGAAGGTGATTGTGGGAGGCTGCAGAGTGATGCAATGGAGGTCCAAACAAATGCATCAGTTAACAGGACAATGtaagaaaacacattacagaCTTCACACCTCATGAGGGTAAGGACTGGTTGGATTGTTTCAACAACTGTGCGCTGCAGCAAGCAACTGAAGTGAATGAGTTCTTTCTAAGTCCTTCAGCTCCCAGGTTGCCACATCAGAGTCCATATTTCAGCaatgcagaagaaaacaaaatgatgccCACACAGCCAGCATGAaaggtgaaatgtattttatccaCTTCCACCTGAAGCAAAGactactttaaatatatatacatatatataaatgtatatttataattacataatacaataatgccAGCAGATTTCCCCCACTTCATACTCTGGTATTATTTAAATCGATTTCCATGTGACCTTCCTTGAAATGCTGTGGCTCAGTATGTGGCCGATTGTCTGAATAATCCCATAGTGCTCATAGACTTCATTCCAAAATCAGCCCGACTGATGACCCTGTCCCAATGACAACTCCCATCTGCAAAGGCCATGTTTCTGGTATCAAGTCCATCCAAGAAAGAGAACTCATGTGTTCTGTGCCTCGAACACAGACGAGCAGCATAAAATCAACAGTGTAGATGGCATGTTTTAGTGTAATATATTCTTCCATTTCTTCTTGGAGGCCTAATATATAAAGTCAGACTTACCAGAATATGCAGAGATTTTGGCACAGGAGACCCAACTTCCAACCCTACATGGAGCTGGGGAGGAGGGTTTTATATAGATGGCCAGGGGGAGAAAGGAATTCAAGTGTCAAGGCTTTGTGGTTTTCAAAGccagccaaaaataaataaaatgacaaaggCATTGATTTTAAACCTTTATAAACAGCCACAAGCTCCTGAATGTTAAATAGTGCCTTGGGTTCAGAAAGGGTTAAAAGGGTAAGAGAGGCTAGAGTAGGAATCCCTGACAGTGATGGCTTTGCTGTTGAGTGAGATGGGGAAACAGGAGGTTATGTCTGCATGGTCCAAAGATGGCTGTCTTGGGGTGTCTGCCTGGCGGATCTACACTATCTCACATTCTCTGTGGGTCTATGTATGGTGGCCCACACTAGATCAAGAAATTTGCAAGTGCCAGGATGAGCAATCACAGTCCAAGCTCCCAGTACCTTTTCTGTCACGCAATAGCTTGGGATGATCCCTGAACCCCCCCGAAGGTGGTCCTCACTCTTCATCCCCACCCATGAGGAACCCCAGGATGAAGTCTGTGGCTCTCTGACGGTCCTGTTGATTCTGTCTGCCGATTAGGTTGGGCGGGGGCCTGATCAGAAGGGTGCCGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106071 True 3040 lncRNA 0.42 2 13896919 13899981

Neighbor

gene id symbol gene type direction distance location
AMCG00021281 NA coding upstream 46462 13848232 ~ 13850457 (+)
AMCG00021280 zdhhc9,LOC105893011 coding upstream 144770 13731696 ~ 13752149 (+)
AMCG00021279 NA coding upstream 192829 13693368 ~ 13704090 (+)
AMCG00021275 NA coding upstream 234450 13650263 ~ 13662469 (+)
AMCG00021276 NA coding upstream 266449 13622849 ~ 13630470 (+)
AMCG00021282 clic2,LOC106611523,LOC102778350 coding downstream 42006 13941987 ~ 13947771 (+)
AMCG00021283 cul4b coding downstream 48501 13948482 ~ 13982728 (+)
AMCG00021297 NA coding downstream 87143 13987124 ~ 13996608 (+)
AMCG00021294 nkap,LOC106611517 coding downstream 141459 14041440 ~ 14047801 (+)
AMCG00021293 NA coding downstream 153238 14053219 ~ 14055981 (+)
G85006 NA non-coding upstream 34421 13861670 ~ 13862498 (+)
G84962 NA non-coding upstream 211674 13680937 ~ 13685245 (+)
G84938 NA non-coding upstream 292760 13603858 ~ 13604159 (+)
G84936 nox1,LOC106611713 non-coding upstream 294991 13600205 ~ 13601928 (+)
G84923 NA non-coding upstream 324472 13571771 ~ 13572447 (+)
G85056 NA non-coding downstream 63128 13963109 ~ 13964224 (+)
G85069 NA non-coding downstream 100615 14000596 ~ 14002419 (+)
G85090 NA non-coding downstream 134234 14034215 ~ 14035662 (+)
G85098 slc25a5,LOC107378486,LOC104931197,LOC107748177,LOC105925769 non-coding downstream 209546 14109527 ~ 14152543 (+)
G85185 dlg3 non-coding downstream 472739 14372720 ~ 14373557 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 459511 13435307 ~ 13437408 (+)
G84749 NA other upstream 1796212 12075345 ~ 12100707 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other upstream 2909745 10963148 ~ 10987174 (+)
AMCG00021240 LOC107742636 other upstream 3177592 10470063 ~ 10719327 (+)
G84425 NA other upstream 4473500 9416267 ~ 9423419 (+)
AMCG00021296 NA other downstream 116152 14016133 ~ 14033557 (+)
AMCG00021292 NA other downstream 169349 14069330 ~ 14073125 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other downstream 1528496 15428477 ~ 15432364 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other downstream 2163518 16063499 ~ 16073621 (+)
G85764 LOC103366846,LOC106930986 other downstream 2690200 16590181 ~ 16592973 (+)

Expression


Co-expression Network