RNA id: AMCG00021317


Basic Information

Item Value
RNA id AMCG00021317
length 2484
RNA type mRNA
GC content 0.51
exon number 25
gene id AMCG00021317
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 14321885 ~ 14339956 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACGATTTCATCTGTAATATGAAAGATCTGACCGAGCAGCTGGTACAGAAACAGACCCCGGAAAACGCGAATGACGTCATCGAGAAACTGTTCAGTGAGGCGTCGTGTTTGGATGGCGTCACGTTAGTTACGACGTCAGAGGCTCAGGTGGAAGACTGTGCCATAAAACTGTGGAACTGGGCAGTAACCAAACATGTGGGCACAGCCATCACTGAGGAGCAGAGGGCAAAAGTACGCCACGTGGCCTGCAGATTGGCGTATGCATATGAGACCAAAGACCCATCGGAGGGAGCCATTCGTAGGCAGATTCTAATGGCCATTAAGACTGGAAGAACATGGCTAGACAGTAAGAAACCCGACCTGGCTGATGTCTTCTTCAGTCTCTCTGTCAAAagCCTAGAGGTATTGTACAGCAGACTGATAGCCCGGGGTGATGGAAAGGCAGATATAAACATTGCTAAAACAGATGTGGAAAAGGACCTTTTCAGAGTGCACTCCTATCAGGCTGAGTCTGCAGTGGTACAGGGGAACCACCAGGAGGCAGTGTCCTGTATGCAGCGCTGCAAGGACATGCTGCTTCGGCTGCCGAAGGAGGCCAAAGTCCTGAGACTCCTAGctactgtttattttgaatgggaTTGTAAGCAGTTCCAGGAAAAGGCCCTCAATGCAGTCACCTTAGCAAACAAGGAAAATGTGCATGCTGCAGGCATCTACCTAAAAATCCAGATCCTTCTGAAGAGTGGAGCTCAGGATGAATCAATGAAAGCAGCAATAACTGCGCTTCTTGATGTAGAGGTTCCTCTTGAGCTGTGTCTGAGCACTGTGAAAGTGCTAATGGCTGAAGACAGAGAGGCACTAGCATTTGAGTTCCTGAAGAGGGTGATCAAGCACTACGAGACATCTCCCGAGCTGGGCAGCGCCCTGGTGCTGCACATAGAGCTGCTACTGCAGAGAGGGAAGGAGCTGCTGGGGAAGCAAAAGATAGGGGACGTCATCACAGGCACTGTCACTACACTGGCAAACAGCTGTCCCCACAGATACTTGGCCATTTACACCTTTTGCTCTGGGACAGAGCTTCCAAAAACTTTGAGGAACTATTCTGAGTCTCTGCAGTGGTATAACTACTCGCTGAGTTTCTATTCAGCGGGCCAAATGGATCAGAACCTGGCCAAACTGCAGAGGAATCGGGCTTCGTGCTTCCTACATCTCCAGCAGCTAGACAAGGCTAAGGAGGCTATAAAAGAAGCTGAGAGGTGTGACCCAGAGAGTATTTTCACACAGTTCAGTGTGTACAAGATTGCTATTCTTGagaacaacacagagagagcTTTAGAGGCTGTCAAAACAATGGGGAAACTGGCAGAGAATCCCATTCAAAATGAGAACAGACTCCTGGTGGCTGAGAATGCAGCCTCCAACCTGCTTAGTCTAGCAGCACAGATTGCTCTAGAGaatgAACAGCAAGATGTGGCCATGAAGGCCCTCAGATGTCTGTGTGAGCACTCAGAGGACAGAGGACAGAAGGTCTCTCAGCTCAGCCCTGCGGAGGGCCTTAGTGCAGAGAAGAAATCTGAAGAGGCAAACTGGTTCAGGAAAATTGCTTGGAACTCAGCCCTACAGTGTGAGAGCTCTCCGGACATGATGAGGGATTTCTTTATGCTTTCGTATCAGCTTTCCCAGTTCTGCCCATCTGACAAAGCCATTCTCATTGGACAGAAGACCTGCCTCCTCATGGCAGCAGCTGCTAGCCTAGAACTAGGACGGGAGTCTTCTGAACTGTCACAACAGTCTGAGAGGCTGACCCAGGCACTGGAGCACATACAGGCCTGTTGGGAGATCTGGAAAACACTAAAAGCTTCAGggGAGTTCTCCAAGGATcccactgacacactgctgctCCTGTATGAGTTTGAAGCTCGAGCCAAACTGAATGATCCCAGACTGGAGACAGTGCTGGAGTCAGTGCTGGAGCTGCAGCAGATTGAAATTAAAACCCTGGAGACCATTGCATCCTTGGCAATGGAGCCTCCTGCTTATTTCCCCTCCCTGTGTAAGAAGGCCTTGAGGATCGCCTTATCTCTGCACAAGAAACGCCCCGATGCAGACCTGTCACGCTGCAGccaGTGCCTGCACAGCCTGATCCAGCTGTCCCTGCCCACAGGGGTGCTTGAGGTGGAGCCGTGGGTGCTGGAGGAAGTATGGGGGTACTACGAGGAAGCCCTCTTCATCATCGGCAGCGCTGGAGAGTTTCCTGAAGTGGAGATCCTGTGGCTGCTGACCAGGGCTTGGAACACAGGGATCCTACTCTACAGCCTGGCCCAGTACCCAGAGGCCGAGAAATGGTGTGGGCTTGGGATGAGCTTCCTTCGTCACCTGGGCACCCTGCAGGAGAGCTACCAGACACAGatgtCAGGTCTCTATGCTGAAGTTCTGGACAGGTTAGACAGAGCTAAGAGAAATCTCATTATCGAGGAATGA

Function

GO: NA

KEGG:

id description
K24574 TEX11; testis-expressed protein 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106180 lncRNA upstream 169342 14109527 ~ 14152543 (+) True G85098
TU106172 lncRNA upstream 248760 14069385 ~ 14073125 (+) True AMCG00021292
TU106162 lncRNA upstream 286223 14034215 ~ 14035662 (+) True G85090
TU106156 lncRNA upstream 302944 14016133 ~ 14018941 (+) False AMCG00021296
TU106138 lncRNA upstream 319466 14000596 ~ 14002419 (+) True G85069
TU106304 lncRNA downstream 32764 14372720 ~ 14373557 (+) True G85185
TU106330 lncRNA downstream 116672 14456628 ~ 14495849 (+) True G85202
TU106507 lncRNA downstream 786811 15126767 ~ 15127233 (+) True G85344
TU106508 lncRNA downstream 787333 15127289 ~ 15127965 (+) True G85345
TU106556 lncRNA downstream 916492 15256448 ~ 15260965 (+) True G85380
AMCG00021312 mRNA upstream 124213 14179178 ~ 14197672 (+) True AMCG00021312
AMCG00021305 mRNA upstream 204619 14110458 ~ 14117266 (+) True AMCG00021305
AMCG00021306 mRNA upstream 215945 14080550 ~ 14105940 (+) True AMCG00021306
AMCG00021292 mRNA upstream 248911 14069330 ~ 14072974 (+) False AMCG00021292
AMCG00021295 mRNA upstream 253493 14063972 ~ 14068392 (+) True AMCG00021295
AMCG00021322 mRNA downstream 150177 14490133 ~ 14493431 (+) True AMCG00021322
AMCG00021323 mRNA downstream 192826 14532782 ~ 14552790 (+) True AMCG00021323
AMCG00021324 mRNA downstream 218173 14558129 ~ 14561490 (+) True AMCG00021324
AMCG00021329 mRNA downstream 255324 14595280 ~ 14596188 (+) True AMCG00021329
AMCG00021331 mRNA downstream 331296 14671252 ~ 14690119 (+) True AMCG00021331
TU105723 other upstream 2221178 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 3334711 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 4898466 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 5688475 8631727 ~ 8633410 (+) True G84301
TU104814 other upstream 7200648 7115381 ~ 7121237 (+) False AMCG00021150
TU106850 other downstream 1723644 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 2250225 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 2316688 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 2316688 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 2657921 16997877 ~ 17004131 (+) True G85869

Expression Profile