RNA id: TU106162


Basic Information

Item Value
RNA id TU106162
length 1448
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G85090
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 14034215 ~ 14035662 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCACTTCAGAGAGCACTAAGaactataaataatatttcaaatacaagaaaaaaatgttaaaaagaaaaaaaaaggctttagtacagttatttacaattaatatacagttgttaatattttatttttgtatttttttttaagcgatGCttaaacagtttttgttttcagacatACTGGGATAGGTCAAGGACTATGGTAGGTTGGTAGTTTATAGAAAACATATGCATAAAAGGGTCTTTCTACTGGCCAGCGCAAAGTAGCAACATATTGACAAGACAAGATAAATGAAAAATTCACAAAGctaacaaaacagaacaatgaTTCCAAATTGTAATCTGAGAGCTGTGATCTACCACACAGTGTACTTCCTAATGCAAATTACACTACAGTCCTTACAGTCACAGAGTATCTTATCACTTTAGACATCAGAACTTCTATGGTGCAATTCTAATTAGTAAGGGGTCTCCAAAATAGCACCGTCACCAAGTGACATTTGGCATCCCTGAACGTAATGGCTTCATGAACAGCCTTAGAAACATACCATCATATATGTCCagcatataaaatgtaattcatgtgGATTTCAATGCACCACAGAAACTCAACTATGGGTTTGCAAATGTAGTGCTAGTATTTTTAGTTACTGATTTTcccattatattaatatatatttgatccCCACAATGTGTACAAGGCGCACTCACAGATAAAGTTTTctttaacaattaaacattcaaCAGGGCCCATTCTCACACAGgagaaacacaaatggaaaaaaggtGCATTGGTGTTCTGTGTCCAATCTCCTCAAGATCAATCCCTTTTTAATCCTATCATTTCATACATGCAGGTCCTAAGATCTGAAAGTCCTGCACAAGGATGGATTGCCGGGTTAGTTCGGTAGCCTTACAACAAGAAACAGGTCGTATCTGGAGCTTTGATTAGACCAGCAGAAAGTACTGAGGGAACTGACAATGAGGCTTCCAGTACCATGTTTCAGAAAGGACAGGCTTTACATTTCACTTCAGAGCATTATTTTCCAGCATGGGGCATTCATGGGGGAGGGGTTAATAAATACACTGcatagctattattattattattatcaacatgATGTTTAAGCTATGTaacaatggttttattttgatccAGTCAATCATTATCTTTCGGGAGACCGACATTAGTACCATCAAAGCCTTTTAAATGATACCATAATAACAACTATATGTGCATTCATACAATCACAGACAtgactttaatttattattattatttatcatggTGGGTGTCTCATATTAACCTCATATTACACTTTTCATGAGCTTTGAAACTTTTCATTCAAACAGGAAAATGTCGTAACTATTTGCAAACAGGACAGTAAGCGCCATAACAACAGGTGAACACTGTGACCGAGTAAGGGACTGCACTGTTGTAAGTGCTGCAATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106156 lncRNA upstream 15274 14016133 ~ 14018941 (+) False AMCG00021296
TU106138 lncRNA upstream 31796 14000596 ~ 14002419 (+) True G85069
TU106122 lncRNA upstream 69991 13963109 ~ 13964224 (+) True G85056
TU106064 lncRNA upstream 116344 13869562 ~ 13917871 (+) True G85013
TU106071 lncRNA upstream 134234 13896919 ~ 13899981 (+) True G85019
TU106172 lncRNA downstream 33723 14069385 ~ 14073125 (+) True AMCG00021292
TU106180 lncRNA downstream 73865 14109527 ~ 14152543 (+) True G85098
TU106304 lncRNA downstream 337058 14372720 ~ 14373557 (+) True G85185
TU106330 lncRNA downstream 420966 14456628 ~ 14495849 (+) True G85202
TU106507 lncRNA downstream 1091105 15126767 ~ 15127233 (+) True G85344
AMCG00021296 mRNA upstream 658 14016133 ~ 14033557 (+) True AMCG00021296
AMCG00021297 mRNA upstream 37607 13987124 ~ 13996608 (+) True AMCG00021297
AMCG00021283 mRNA upstream 51487 13948482 ~ 13982728 (+) True AMCG00021283
AMCG00021282 mRNA upstream 86444 13941987 ~ 13947771 (+) True AMCG00021282
AMCG00021281 mRNA upstream 183758 13848232 ~ 13850457 (+) True AMCG00021281
AMCG00021294 mRNA downstream 5778 14041440 ~ 14047801 (+) True AMCG00021294
AMCG00021293 mRNA downstream 17557 14053219 ~ 14055981 (+) True AMCG00021293
AMCG00021295 mRNA downstream 28310 14063972 ~ 14068392 (+) True AMCG00021295
AMCG00021292 mRNA downstream 33668 14069330 ~ 14072974 (+) False AMCG00021292
AMCG00021306 mRNA downstream 44888 14080550 ~ 14105940 (+) True AMCG00021306
TU105723 other upstream 1933508 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 3047041 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 4610796 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 5400805 8631727 ~ 8633410 (+) True G84301
TU104814 other upstream 6912978 7115381 ~ 7121237 (+) False AMCG00021150
TU106850 other downstream 2027938 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 2554519 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 2620982 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 2620982 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 2962215 16997877 ~ 17004131 (+) True G85869

Expression Profile