RNA id: AMCG00021283


Basic Information

Item Value
RNA id AMCG00021283
length 3383
RNA type mRNA
GC content 0.44
exon number 15
gene id AMCG00021283
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13948482 ~ 13982728 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTTGGACAAGTGGTCACTTTTATCGGAAACCTAAAAGAGCATGGACATTCAATTCCAGACCTGCACCATCACCATCATGTCAAGGCTGCCAGCAAGGAGGAGCTACTAAAGCTACCAGGGGCTAAGAAACTGGAGCTGAGTCAGAGAGTGCGGGTGTACTGTGTTATCCTCGTGTCACCAAAGGATTTAATTAACTGGGGAGCAGCTAAAGAGACCTGGAGTAAGCACTGTGACAAGCCAGTGTTCTACAGCTCGGAGGATGCCAAAGCCCTGGAGGCAGTGGTGGTGGGAGAGAAGGACGAATGGCTCAAACTGAGGAAAGCCCTGAAGCATGCCTACGACAACAGCAAAGGCTACAGCTGGTTCTTCATTGCGCGGCCCACCACCTTTGCCATCATCGAGAACCTCAAGTACCTGGTGTTCAACAAGGACCCTGAGCAACCTTTCTACATTGGGCACTCTGTGAAATCCGGAGAGCTAGAATACGTGGAATTTGACAGCGGCATAGTCCTAAGCATAGAGGCGCTGAAGAGGCTAGTGGGGGCTTTCAATGACCCCGAGAAATGCCCTGAAAAAGGCCACGGGCTTTGGACAGTGTCCGAGGAGAAAGAGCTTGCCGTATGCCTGAAGTACACCGGTGTGTATGCCGAGAACGGGGAGGACGCACAGGGGAAGGGCTTGTTCAACACAAAGAGTGTCAGCTCTCTCATCAAGGATGCCTTGGCTCAAAACAACCAGGAAGTCATAGAAGGATGCTGCTCAGACTTGGCCATCACCTTCAATGGAATGGGCCCCAGCCAGATGCATGTCATGATGTTTGGTTTATCTTCCCCTAATCCCCCACCGCCAGCTCAGGAGGTTAGACCAGCAGCTTCTGATGGTAATAACGGTAGCAGCCACCATTCAACGTCCAAAAAGCGAAAAATAAACAGCTCCGAGAAGGAAGACTTTGACTCCAGTCCCTCGTCTCCTCCTAAGAGCCTGCACAGCTCCTCCGGCTCACACCACATACAGAAGAAGTTGAGGTTCGAGGACTCAGTGGATTTCTTTGGACTGGATGTGAAAATGGCTGAGGAGTCCTCTTCTTCATCTGCATCGTCTTCTAACAAGAATAAAAACGTGTTTCTGGCCGCTGGGGTTGGGCACCATGCTAATGGACTGACGAAAACCTCCGGCGGCTCCGCTACCTTCTCAAACAGTAAACCTGGGGCTGCCAAGAAACTAGTTATTAAGAACTTCAAAGAAAAGCCAAAATTGCCAGAGAACTACACTGACGAGACCTGGCAGAAGCTGAAAGAGGCAGTGCAGGCCATTCAGAACAGCACTTCAATCAAATACAATCTGGAGGAGCTCTATCAGATTTATCAAGATTCTTTTGAGCAGCGCTTTTTAGAGGAGACAAACCGCCTGTATGCTGCAGAAGGACAGAGGCTGATGCAGGAACGAGAGGCGTTTGGAAGCACGATAGTCATCAACCCCGAGAAGGATAAGACCATGGTGCAGGAGCTGCTGGATTTCAAGGACAAGGTGGATCACATCATTGACATCTGCTTCCTGAAGAATGAGAAGTTTGTCAACGCAATGAAGGAAGCATTCGAAACGTTCATTAACAAGCGGCCCAACAAACCAGCCGAACTCATCGctAAATACGTGGATTCGAAGCTGCGAGCTGGAAACAAAGAGGCCACAGATGAGGAGCTAGAGAAGATGTTGGACAAAATTATGAtaattttcagatttatttatgGAAAAGATGTATTTGAGGCCTTTTATAAGAAGGATCTGGCGAAGAGGTTGCTGGTGGGGAAGAGTGCTTCAGTAGATGCTGAGAAGTCCATGTTGTCAAAACTCAAACACGAATGTGGAGCTGCATTCACCAGTAAACTGGAGGGAATGTTTAAAGACATGGAGCTTTCCAAAGACATAATGGTGCAGTTTAAACAGTATATGCAGTGTCAAAACATACCTGGTAACATTGAACTGACGGTAAACATCCTCAccatgggctactggccaacgTATGTGCCTATGGAAGTTCACCTGCCTCCAGAGGGCAAAAAAGAGTTACAAGTGTCATTATTCCAGACACTGGTGTTACTCATGTTCAATGAAGGCGAGGAGTTCAGTTTGGAAGAGATTAAGCAGGCAACAGGAATAGAGGACAGCGAGTTGCGACGGACCCTGCAGTCCCTGGCTTGTGGTAAGGCCCGTGTCCTCACCAAGACCCCCAAGAGCAAGGACGTAGAGGATGGAGACAAAATAATGAAGATGAGGAAGACTCTAAGCCACAACCTGCTGGTGTCCGAGGTGTACAACCAGCTCAAATTCCCGGTCAAGTACTACATACCAATCTGTAAGCCAGCTGACTTGAAGAAGCGAATAGAGTCACTTATTGACAGGGACTATATGGAACGTGATAAGGAGAACCCTAACCAGTACAACTATGTGgcataaaggaaattaaaacatgctgTCAGCTGCTCCGAGCACTTGGTCTCCTATCCAAGCTCCAGTGGATGTTACTATTACCCTGTTGAACCCAGCAACCGACAACTGAATGGATGTGGCCCCACAACACAAGACTTACCTTGGAGACTGTTTTCCTGTGGACTGCATGCCCATTAAAGAGAATACTGTCAATTTTCAGAATGCTGGTTAATGAGAAGCAAAAGTTACCCTGGAcaacaaaaaggcaaaacatGGTGGTTTGGATGagtatattaaatgttttttttatcaaaaaaaaaagtatttattttgaaacttggatttttgtcagttttacattttgtcatcctattactttttttgtttgtttttttaatacatcacTTTTTGCTTTCTGAATCACCAGTGTAACCCCTTGCAGGAGACTATTCTTGACACTTCTTGATAAATGAATAAAGTTCATGGATTAAATCGGCGCCGTTTAAACTCCCCGTATTCAACCGGATTAATCAAATCTCTGTTGTATGCCTAGTCCTTTTCAGATCAAGTGGAATCTGAAAAGattcagcattttaaaagatCATCATATGAGCAGGATTCCagtttaaaagacaaaataaaaaatctgaaaatataattttaaagaataagGTGCCAAACAAGACCGCACttcagtttttattacatttcttgtttttgatgCTGCTAAACGTCTTCACTTGTAAATGCATATTGAAActcaatctttttcttttttctttttttttaagaacaaaagTACTCTTCcaacattttaatgatgtttgtgtatatacaaaCTTTACAGAAATTATTCTGAGATTGAGAACCAAGTATGACCTATAGATTTACGTCTCATAAATAGGTCTTATCTTTTAAGTATacgaaatgtaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106064 lncRNA upstream 30611 13869562 ~ 13917871 (+) True G85013
TU106071 lncRNA upstream 48501 13896919 ~ 13899981 (+) True G85019
TU106054 lncRNA upstream 85984 13861670 ~ 13862498 (+) True G85006
TU106002 lncRNA upstream 263237 13680937 ~ 13685245 (+) True G84962
TU105971 lncRNA upstream 344323 13603858 ~ 13604159 (+) True G84938
TU106138 lncRNA downstream 17868 14000596 ~ 14002419 (+) True G85069
TU106156 lncRNA downstream 33405 14016133 ~ 14018941 (+) False AMCG00021296
TU106162 lncRNA downstream 51487 14034215 ~ 14035662 (+) True G85090
TU106172 lncRNA downstream 86657 14069385 ~ 14073125 (+) True AMCG00021292
TU106180 lncRNA downstream 126799 14109527 ~ 14152543 (+) True G85098
AMCG00021282 mRNA upstream 711 13941987 ~ 13947771 (+) True AMCG00021282
AMCG00021281 mRNA upstream 98025 13848232 ~ 13850457 (+) True AMCG00021281
AMCG00021280 mRNA upstream 196333 13731696 ~ 13752149 (+) True AMCG00021280
AMCG00021279 mRNA upstream 244392 13693368 ~ 13704090 (+) True AMCG00021279
AMCG00021275 mRNA upstream 286013 13650263 ~ 13662469 (+) True AMCG00021275
AMCG00021297 mRNA downstream 4396 13987124 ~ 13996608 (+) True AMCG00021297
AMCG00021296 mRNA downstream 33405 14016133 ~ 14033557 (+) True AMCG00021296
AMCG00021294 mRNA downstream 58712 14041440 ~ 14047801 (+) True AMCG00021294
AMCG00021293 mRNA downstream 70491 14053219 ~ 14055981 (+) True AMCG00021293
AMCG00021295 mRNA downstream 81244 14063972 ~ 14068392 (+) True AMCG00021295
TU105723 other upstream 1847775 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 2961308 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 4525063 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 5315072 8631727 ~ 8633410 (+) True G84301
TU104814 other upstream 6827245 7115381 ~ 7121237 (+) False AMCG00021150
TU106850 other downstream 2080872 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 2607453 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 2673916 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 2673916 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 3015149 16997877 ~ 17004131 (+) True G85869

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1398817 True 1576 lncRNA 0.38 1 NC_048578.1 20237512 ~ 20239087 (-)