RNA id: AMCG00021282


Basic Information

Item Value
RNA id AMCG00021282
length 2139
RNA type mRNA
GC content 0.44
exon number 6
gene id AMCG00021282
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13941987 ~ 13947771 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctctctctctctcctcttgtATACAGTACACAACTTGTAGTCTAGACCAGCTCACTGCTGTCACTGCAGACACACCGAGCTCCCTGTTCTCAGCACAAAGACCGAGTGGAATAACACTGTCAGATACTCTAGAAATTGGAGGAAGAATATTGTTACCCTGGAGAAACATGGCACTCAGAAGATCAAACAAGGCGCCTAATATCGAGCTCTTCATAAAGGCTGGCCTGGATGGGGAGAACGTGGGGAACTGTCCCTTCTGTCAGCGCCTCTTCATGGTCCTGTGGCTGAAAGGAGTCAAGTTCACAGTGACCACCGTTGACATGAAAAAGAAACCAGATGAGCTGAAGGACCTGGCTCCAGGGACCAACCCTCCTTTCCTCCTCTACAACGGGGAGCTGAAGACAGACTTCCTGAAGATCGAGGAGTTCCTGGAGCAGACGCTGGCCCCACCAAGTTACCCACGTCTCAGCCCACTGAACAAGGAGTCCTTTGATGTTGGCAGCGACATCTTTGCCAAATTCTCTGCTTTCATCAAGAACAACCCAGCAAACAAGAACCACGAGAAGGCCCTGCTGAGGGAATTTCAGCGATTAGATGATTATCTGAACAGTCCCCTGCCCGAGGAAATTGACCCCAACAGCACCGAAGACCTGCTTGTCTCAAACAGGAAGTTCTTGGATGGCAACCAGCTCACCTTGGCTGACTGCAACCTACTTCCCAAGCTGCACATCATCAAGATTGCAGCCAAGAAATACTGTGACTTTGATATACCAGCCCAATTCACTGGCGTGTGGCGCTACCTTGGTAATGCCTATGAGAGGGACGAGTTCAAGCACACCTGCCCCGCCAATGGAGAGATCGAAAGGGCCTATCTGAGTGTGGCctgcaagagaaaataaatgccaaGCCATGAACCCTGCACTTGCCCTGGCTACCCaaacccacccccaccccacagaACAATATCACCTTGCACAGGACTCTGAACGCTGACCAGGAGAACTGGACAACCACATTTTCTCCCCTCTCTTAAATGATCTCTCATTTTGAAGACCAGGCACAGTCGCTCTGTGcaaagacagaaacaaagatGAGGTGCAAGAGTCAAGCAACTCTGAAGATCCATCTCTGAGGTTGtgctttagtttttatttgcaatatatCTTGTTTCTCCAAAGCCCAGTTCCACAGACATCTAATGCACAAGggaaagaagaataaaaaagggAGTGTCATTTCAGTGCCCTTTTGGATTTTTTGTTCAGTGGGAAGATTTGTTATTCAAAGACGGGGTGAGAGCTCTAGCCCTCACGTCACCCATTCAGTGCAACTCACTCCGGCACGAAAGAGAAACCCATGTTCTCCCCTGGGGTAAATTACAATCCTGTGGAGAAGAGTGGGTGAATGCAATTCCCCTGCCACAGGGCCGTCACAGGATGCAGACTTTTTACGAATAATTTAAAGGATCCCTTCAGTTTATAGAGCCAAAATGGGATCGCCAACAACACTGCCTTTAAAAAGAGTCGAGAAGGAAAATGTTCAGATGCTCAATTACATTCTGGTTACAAAATTGCGCATTACAAAACCTGCTTCAACATCTCAGTTCAGTAGATGCATGACTGGGCATGTCCGcctttttactttaaatatagtATATCCGTAATCTGTTCTCATCTCACATATAAGCCGGGCATATGAATTGGgaatatatatgttgtataGCCGTTATGCACATCACAAATGTATCCATTACACATTTACAGTCAGAGAGAACttactatatatacatagtaAAAAGAATCCTGTATATAGCATTTATATACTTTTCATGATGGCAAAACTattgaaacaatgtaatgtttcataAATTGTCTAAAGCCATATCTTATTTGATGAGAGCTGAGTGCCAGacattgatgatgatgatgatgacaatgatgatATGACCCCCATGGAAAAATACCAGCTGAGTCTCGTTGTGTGAATCCGTGTATGCAGACTGGCCTGATCTttgaagtgtttaaaaataccaccaagtgctgttttttaatactaatatttgtatttatgtgccatacaaaatagtattttgttataattatataatgtttttctattaaaaacgTGACCTTATTTTCC

Function

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0044070 regulation of anion transport biological_process
GO:0016020 membrane cellular_component
GO:0005247 voltage-gated chloride channel activity molecular_function

KEGG:

id description
K05022 CLIC2; chloride intracellular channel protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106064 lncRNA upstream 24116 13869562 ~ 13917871 (+) True G85013
TU106071 lncRNA upstream 42006 13896919 ~ 13899981 (+) True G85019
TU106054 lncRNA upstream 79489 13861670 ~ 13862498 (+) True G85006
TU106002 lncRNA upstream 256742 13680937 ~ 13685245 (+) True G84962
TU105971 lncRNA upstream 337828 13603858 ~ 13604159 (+) True G84938
TU106122 lncRNA downstream 15338 13963109 ~ 13964224 (+) True G85056
TU106138 lncRNA downstream 52825 14000596 ~ 14002419 (+) True G85069
TU106156 lncRNA downstream 68362 14016133 ~ 14018941 (+) False AMCG00021296
TU106162 lncRNA downstream 86444 14034215 ~ 14035662 (+) True G85090
TU106172 lncRNA downstream 121614 14069385 ~ 14073125 (+) True AMCG00021292
AMCG00021281 mRNA upstream 91530 13848232 ~ 13850457 (+) True AMCG00021281
AMCG00021280 mRNA upstream 189838 13731696 ~ 13752149 (+) True AMCG00021280
AMCG00021279 mRNA upstream 237897 13693368 ~ 13704090 (+) True AMCG00021279
AMCG00021275 mRNA upstream 279518 13650263 ~ 13662469 (+) True AMCG00021275
AMCG00021276 mRNA upstream 311517 13622849 ~ 13630470 (+) True AMCG00021276
AMCG00021283 mRNA downstream 711 13948482 ~ 13982728 (+) True AMCG00021283
AMCG00021297 mRNA downstream 39353 13987124 ~ 13996608 (+) True AMCG00021297
AMCG00021296 mRNA downstream 68362 14016133 ~ 14033557 (+) True AMCG00021296
AMCG00021294 mRNA downstream 93669 14041440 ~ 14047801 (+) True AMCG00021294
AMCG00021293 mRNA downstream 105448 14053219 ~ 14055981 (+) True AMCG00021293
TU105723 other upstream 1841280 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 2954813 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 4518568 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 5308577 8631727 ~ 8633410 (+) True G84301
TU104814 other upstream 6820750 7115381 ~ 7121237 (+) False AMCG00021150
TU106850 other downstream 2115829 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 2642410 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 2708873 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 2708873 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 3050106 16997877 ~ 17004131 (+) True G85869

Expression Profile