RNA id: AMCG00021294


Basic Information

Item Value
RNA id AMCG00021294
length 3688
RNA type mRNA
GC content 0.41
exon number 10
gene id AMCG00021294
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 14041440 ~ 14047801 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCGGCGCACCAGTTTCCGGGATCCCGCTCTGTAAACAACGATATTTCTGCGAGTATGAGCGGCGGCTGCTGGTAAACCGACCTTGGCTGCATAGATCCGGACAATGCCTCCCATCCACCGGTCCCGCAGTCGCAGTTCGGAGCCGCTCGCCAGCCCCAAGAGGCGGAAGCACAGCAGGTCCCGCAGCGGCAGCCGGTCCAGGAGCCCCCCTGTCCGATCAGCCCGACACAGCGTGGGGTCTGTTAAAGAGGAGAGGCGGACACGATGGGCCCGGTCTCCGTCCGCCGAGAGGGACGGGCCGAGGTTTCACAATGGAGGGGGCCGTTATAGCCGGTCGAGGTCCAGGGAGAGGGATGTGAGACACGGCCATGGCGGTCACGACAGATCCCGGTTCGACCACTACGACAAAAGGGATGATATTCTGCGTCAGAGGCAAGAGGCCTTTATATCAAGGCGGCTGCAGGAACGCGAAAGGATAGGAGAACTGGGGGCACCTGAAGTCTGGGGATTTTCTCCTAGAGTCCGAGAACCAGATTCTGATGAGCATACCCCAGTTGAAGAAGATGCTAAGAAAAACAGCAGTTCTGATTCAAGTTCAGAAGAGgaaaggaggaagaagaagaagaagaagaagaagaagtccAAAAAGaagaagcacagaaaacatTCAGAAGACAGTGAGTCTGAAAGTGATTCTGAAGatgaagaagagaaaaagaagaaaaagaaaaagaaaagcaagaacaaaaaGAAAAAGTCAAAGAAGAAGAAGGCCAAGAAGAGCCGCAAAGAGTCGAGCGACTCCAGCAGCGAGCAGTCTGAGGACGAGGATGACGAGCTGAGCGGGGAGCTCTGGGTGGAGAGAACCAGTGTCAAGGATGACAACATGGTCGGTCCTGAGGCTCCGATGAGTCAGCTGTCCCAGGATGACAAACCTCTGAATTATGGTCATGCCCTGCTGCCAGGTGAAGGAGCAGCCATGGCGGAGTATGTAAAAGCAGGGAAACGAATCCCAAGAAGAGGTGAAATTGGATTGACCAGTGATGAGATTGCATCATTTGAGAAATCTGGCTACGTCATGAGCGGCAGCAGACATCGCCGAATGGAGGCCGTACGTCTGCGTAAGGAGAACCAGATCTACAGTGCTGATGAGAAGAGGGCCCTGGCATCCTTCAACCAGGAAGAacggaggaagagggagaacaAGATTCTCTCCAGTTTCAGGGAAATGGTGTACAGAAAAACCAAaggcaaagaagaaaaataaaaccatgcacGATAATGACTGTTTGATTCAGATCTCTGAATTTGAAAATTGGTTCTGGGCCTGTTTTTATAGGgtggacttttttgttttttaaggtaaaAGATACATGTTAaacgttttctttctttttaaataagtacattttccATATTAGCagtaatgactttcgctgtaacTGTTCTTGGTTCATATTTAGTGTTTGTGAATGAACTATCAGAAGCCTGGTTATTTGAAACAGCccaaaacatcaataaatagtTCAAAGGGGTTAacttaaatacaatgaaaaacaacaagttTACTTTAATGTGTCACTGTAAAACAACATGTACAGTCCAGGCTGTATGAGATTATTTCTACTGCTCAGCTACTAAGTgttttatgttatatatgtaaCAGTGATCTCATTGTTTTCGAAAATGGGGTAAAGTACCTTCTAAAAACATTGCTGCAAAGTCTTTTATTTTAGGAGTAGGATGTCTTCTGGTGTTTGAAACCATTACATCAAGATAATTGGGATTCGTGTCAGTGATCCTGCACTTTGATCAGAAGGACTTTTCACCATAATATGTGgaatttttttccctccagatTCTACGTTTAATAAAAGCCATGCTCTTTTTATGACAAAGCAAACAATTTTATTCAATTGTTAGAAATCGACAGTTTCCTGTAGAATAGTCTTGCTTTCAATTACATCTTTCAGCCATTTTTCTCTGAACCTTGTTTTTCCTGGCCTGTGGAAAAAAGGGGGGTTAAAATGAATTAGATgtgcacattttttaaactgccATGCATACTTGAGGGGGTTAGTGATTTGCATGATAGACTGAATACTGTCTTCAGTAAACTgagtttgtattcatttttcagaacatcctgcttgtgtttattttaattaaaatgtcatcataATAGGCttactgcattttgttttcattgtcttATTTGTAAGTATGAAATCGCCTTTTTTGTCATTGGGATGGAGTTTTGTTTGGCCTGAATTTTCAATTTCACCAAAAGCAATATAGCCTCACCTTAAATTCATGCCCTGTGATCGGGGGTGgtagcattttattataaaacctGGCAAATCAAATACTTTCTCTCTTCATTTGGTAAAGCAAAGTGTTTTTGCCACTCCAGATAGACATTTACTTGTTGTTACAAAATACACTGGGGAGGAAATAACACCTTTGTTATGACATGTAGCAGGGATAAATGGGCAGTCCTTTGCAACTTTCTCATTCTTACATGGATATAATCATTGTAGTACAAATGgagtgatatatatttatttgatctcccccacccccatttacCTGTGCAACAGCTGGTTTGATTCCACAAGATAGCACACTTCTACAGGCAAGGTctaacacagagagacaaaacaTTATGGGGGGAAAATATATTGCTACAGGCTACAGAAGGCCCTTTAAACTATTTGACCAAGTATGTGATGTACCTGTGGTTTGATCTTCGAGATCTCGATGATGAAATAGACACAAGCTGTGGCCTTTGGAATTGGTTGTCTTCTAGTAGGGATGCTCCACTGCACTCTGTAATGATACTGTGTGCAGAAATCCAGGTCTTTTTCCTGGAGGAACACCAGGTTGTGAAGCCAACTGGAGTGCAATTCCCAAGTCTGCGAAGCGAGATTTCGAACTTAGAAATAAAGGACACTCAATGGAAATGCTACATGggctaaataataatacttaaaaaaaaatgaataaaacactcAGGAATTAAATTAGAAAGACCTTCAACAAAAGTGTTGCAGAGTATTCTGTGCATGTTAACCTGTATGTTCCTTTCTCAATGTAAATTAGCTTGCATTCCTCCTGACAGTTTGATGCTTAACTATGTGGACAAAGGGATTACTGCTTGCATTTGAGAAAAGTCCACATTGCCAGTATATTTGTGACTAATCAAAAACAGCTTTTCAGTGGACACgggtttattaaaatgttctagAAAAGATGCAAAATGTGTATTAGGTACTTACAGAAATATATTCTTCAATTTGATTCATTGCCCTCTCTATTGTAAAATCCTTGCAGGTAATCCAGTCAATATTATTCATCTGATAATCTGTggtttctaaaattaaaataaagaatgtcGGTTTGcaaggaacaacaacaatatatgaAGACATGAATTGCATTAGATTAGATTGATTTTTGATTTCGTGTTCACTACCTTTTTCGGATTGATCACTGTGTATAAGGTAATTCTGTGCATTTTCCAGAGCAATGTCTATTAAGGTAGAAGCTTCCTTGTTCAGTTTGTCTGCGCTGTCCTCCATTGTGGTCTTCATGAAAtagaaggaaacaaaatctgtttataCAGTACTCGCGTAACGTgcatcataataacaataattctgataataaaataacgtcttttaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106162 lncRNA upstream 5778 14034215 ~ 14035662 (+) True G85090
TU106156 lncRNA upstream 22499 14016133 ~ 14018941 (+) False AMCG00021296
TU106138 lncRNA upstream 39021 14000596 ~ 14002419 (+) True G85069
TU106122 lncRNA upstream 77216 13963109 ~ 13964224 (+) True G85056
TU106064 lncRNA upstream 123569 13869562 ~ 13917871 (+) True G85013
TU106172 lncRNA downstream 21584 14069385 ~ 14073125 (+) True AMCG00021292
TU106180 lncRNA downstream 61726 14109527 ~ 14152543 (+) True G85098
TU106304 lncRNA downstream 324919 14372720 ~ 14373557 (+) True G85185
TU106330 lncRNA downstream 408827 14456628 ~ 14495849 (+) True G85202
TU106507 lncRNA downstream 1078966 15126767 ~ 15127233 (+) True G85344
AMCG00021296 mRNA upstream 7883 14016133 ~ 14033557 (+) True AMCG00021296
AMCG00021297 mRNA upstream 44832 13987124 ~ 13996608 (+) True AMCG00021297
AMCG00021283 mRNA upstream 58712 13948482 ~ 13982728 (+) True AMCG00021283
AMCG00021282 mRNA upstream 93669 13941987 ~ 13947771 (+) True AMCG00021282
AMCG00021281 mRNA upstream 190983 13848232 ~ 13850457 (+) True AMCG00021281
AMCG00021293 mRNA downstream 5418 14053219 ~ 14055981 (+) True AMCG00021293
AMCG00021295 mRNA downstream 16171 14063972 ~ 14068392 (+) True AMCG00021295
AMCG00021292 mRNA downstream 21529 14069330 ~ 14072974 (+) False AMCG00021292
AMCG00021306 mRNA downstream 32749 14080550 ~ 14105940 (+) True AMCG00021306
AMCG00021305 mRNA downstream 62657 14110458 ~ 14117266 (+) True AMCG00021305
TU105723 other upstream 1940733 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 3054266 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 4618021 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 5408030 8631727 ~ 8633410 (+) True G84301
TU104814 other upstream 6920203 7115381 ~ 7121237 (+) False AMCG00021150
TU106850 other downstream 2015799 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 2542380 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 2608843 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 2608843 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 2950076 16997877 ~ 17004131 (+) True G85869

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00015634 False 1730 mRNA 0.45 8 NC_007125.7 33418500 ~ 33425233 (-)
grasscarp (Ctenopharyngodon idella) CI01000000_11906348_11910227.mRNA True 999 mRNA 0.44 5 CI01000000 11905969 ~ 11910238 (-)