RNA id: AMCG00021297


Basic Information

Item Value
RNA id AMCG00021297
length 1326
RNA type mRNA
GC content 0.45
exon number 9
gene id AMCG00021297
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13987124 ~ 13996608 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCAGCGAGAGGGCAGCGGGTTGTGCATCGCAGCCAGCAGTGGTGATCGTCTGTGCCTGTGTTAGTGTCGTTTGCGGAGTCATCATGTACCGTTACGCTTGTGTGGCTGTAGTTCTGATTTTGGGATGTGGAATTCCACTGTTCCAAACCACAGACGTGAGCATCCTGGATAAAGATAACAAGACATGCATGTACAATAACATGATGGTGAACTTCACTGTTCTCTACAATGTAAATGGCACCAATTCTACTGCAAACTTTGTTCTTCCTGAAACTGTCAATACAACAGGAAGCAAGTGTGGTGAGAAAAGCAGTGTGATGATCCTTCATTTTGGAAATGGTCATTCCTGGAGCATTCATTTTATACGGAACAATGATACATACAAATCAGACAATATCACTTTCACCTACAATCTTAATGATCCAAAAATCTTCCCTAATGCCACTGAGACAGGTTACAGAACAGTTGAAAACGAGTATAAAATGAAGGGTATACCAATTAACCACTACTACAAATGCATGAGCAATGATAAACTTGTAAAAGATGGCGTCACGCAGACCTTCTGGAATGTCACTTCTCAGGCGTTCATAAAGAATGGAGAACTTAGTCAAAATGTGACCGTGTGTGATGCAGATATCCCATCAACCACAGTTCCCCCCACCACTAATGGCACTACCCCAGGGACAAATGCAACTACAGCAGCACCCACCACTACACCCCCACCCCTGCCCAATCCAGAGACTCACACATACAACGTGTCCAATGCCAACAACAGTGTTTGTCTGATGGCTACTATGGGAATGCGGGTCAGCTACAACTATCATGGCAAGGAATTCCAGATCAATATTGAACCAAACCGAACCACCGCTGGGGGAAAATGTGCTGAATCAAATGTCTCTAGCCTGACCCTGAATGATTCTAATGGAGTGGTGATTAACTTCACCTTCATCAAGAGTGACTCCAAAAACTTTTTCTTGCAAGAAGTGTCCGTACAAATCAAAGTCGATGTCTCTGAGACTTTTAAGCAGACCAACAACACTCTGAGATACTGGGAGGCATCTCTTGGCAGCTCTTACATGTGTAACAAGATGCAGGCTTACCCCATCACCGCAAACCTCTCCCTCACCGCCTTAGACCTGAGAGTGCAGCCATTCAACTTGGAGAATGACAAGTATGCCACAGCGGAGGAGTGCTTCCTGGACTCTGACCTGAGCTTTCTTGTGCCTATCGCTGTTGGGGTGGCTTTGGGCTTCCTAATCATCCTTGTGCTAATCTCTTACCTGATTGGGAGGAGGAAAAGCCGTACAGGATACCAATCAGTATAA

Function

GO: NA

KEGG:

id description
K06528 LAMP1_2, CD107; lysosomal-associated membrane protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106122 lncRNA upstream 22900 13963109 ~ 13964224 (+) True G85056
TU106064 lncRNA upstream 69253 13869562 ~ 13917871 (+) True G85013
TU106071 lncRNA upstream 87143 13896919 ~ 13899981 (+) True G85019
TU106054 lncRNA upstream 124626 13861670 ~ 13862498 (+) True G85006
TU106002 lncRNA upstream 301879 13680937 ~ 13685245 (+) True G84962
TU106138 lncRNA downstream 3988 14000596 ~ 14002419 (+) True G85069
TU106156 lncRNA downstream 19525 14016133 ~ 14018941 (+) False AMCG00021296
TU106162 lncRNA downstream 37607 14034215 ~ 14035662 (+) True G85090
TU106172 lncRNA downstream 72777 14069385 ~ 14073125 (+) True AMCG00021292
TU106180 lncRNA downstream 112919 14109527 ~ 14152543 (+) True G85098
AMCG00021283 mRNA upstream 4396 13948482 ~ 13982728 (+) True AMCG00021283
AMCG00021282 mRNA upstream 39353 13941987 ~ 13947771 (+) True AMCG00021282
AMCG00021281 mRNA upstream 136667 13848232 ~ 13850457 (+) True AMCG00021281
AMCG00021280 mRNA upstream 234975 13731696 ~ 13752149 (+) True AMCG00021280
AMCG00021279 mRNA upstream 283034 13693368 ~ 13704090 (+) True AMCG00021279
AMCG00021296 mRNA downstream 19525 14016133 ~ 14033557 (+) True AMCG00021296
AMCG00021294 mRNA downstream 44832 14041440 ~ 14047801 (+) True AMCG00021294
AMCG00021293 mRNA downstream 56611 14053219 ~ 14055981 (+) True AMCG00021293
AMCG00021295 mRNA downstream 67364 14063972 ~ 14068392 (+) True AMCG00021295
AMCG00021292 mRNA downstream 72722 14069330 ~ 14072974 (+) False AMCG00021292
TU105723 other upstream 1886417 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 2999950 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 4563705 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 5353714 8631727 ~ 8633410 (+) True G84301
TU104814 other upstream 6865887 7115381 ~ 7121237 (+) False AMCG00021150
TU106850 other downstream 2066992 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 2593573 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 2660036 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 2660036 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 3001269 16997877 ~ 17004131 (+) True G85869

Expression Profile