RNA id: TU106172


Basic Information

Item Value
RNA id TU106172
length 2319
lncRNA type sense_over
GC content 0.37
exon number 3
gene id AMCG00021292
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 14069330 ~ 14073125 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTAACCTTTGCCCTTTCCCAGAGTTCCCTCTCTTTCTGAACCGCCATTGTGGTGATAGGGTTGTGGATTCACAATGtcatcacaCAAGACCTTCAGGATCAAGCGCTTCCTCGCtaagaagcagaagcagaacaGGCCCATCCCGCAGTGGATCCGCATGAAGACTGGCAACAAGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGAACCAAGCTGGGCTTGTAAACTCGGCAGTTTGCTTCTTCACATCAGCCACCACAGTTCTTCTCTACGCAGACTCCTGGGAATCCCCAAGAACACATGCCATCTCCAGTGGAACACATCTAATTGTACAGATACTTTGCATATTTTCATATGTGTGCAATAAAAATGAGACCCggtgaagaaacaaaaatgtgtagtttgttttgcagtgcttTGGAATaactggttttcattttcaggttttaaagGCACTCTACAAGGTGGAGCAGCTGTTGCATGCAAGATTATAAATTAAGCTTTGTAATCTGATGAAAGCATGATGTACTCgatgctttattttttaccgtacatttttattgtactgtTGCCAAATGGATTTCAAAATTCTTAAAGGTTCATCTTGTCATTTTTAGAAATTGAAAATAGTGTTCCTGATGTTCAGATAATACATTACTAGAAATGTTCCAAGTTAAATTCCATGTGGTTTCAGTATTGATTTGAACAAATGGGCAAATGCTCTCAGACTGGCATGGAGAATGGCAGTGGCAATCTTCAGTGTTCTCTAGAAAGGCTTAAAGAATGAGATCAGCAATGATTTTAAGCACCCCTTCACAAACCATGAACTGAAACTGGGATTTAGGGTAAGTGGGTGTGAAAATGCATCCATCCCTTaacctttttagtttttatcatACTTGGGAGGTTTGAGCTTTTAAGAACAGTctgggagagagaaacatttgGAAGGAGTGGTATTGGCTTAGTAGGCCTCAGAAATGTAAGACAAACTTGCACTTGTACACTCTAACCATCTTTGTACAAACAGTCTTTCTTTCAGGTAAGGGTTGCTTTTCTTCTGATAACAGAATTGGTTAGAGATTTGTATGGGCCAAGTTGGAAATTTtggttttaactttgcctttaAAATGGGGAATGTAAGTTAGAAATCATTTGAAAGGTTAGGTTGAAATCTAATTTATGCTCTGCAATGTGGCATCACAATTCGATTCATAAGTGTTAGGCTTATTTATCTAATTGACAATTTGTAAATTTAAGTAGTTTACtgtagaagaaaaggaaaatatgaagTGATTAAGTAATGATTCTAATAGGGACTATATATAGAAAGTTTCTTTGTTACATTTCTGGTTTCGAGAGCAATATTGAGtaatttcttcttttcatgGATATGAAGTTAAAATTTAAAATCGGTTATATTTTTGTCCCAGGTTAGGGTTAGACTCCACAGTAAACTTAAGCTTTCATTAAGGTTAGGCTTGTTTTTCTCCTGCTTTAACTGAGTTGGGTGTAGATATGGGCCTAGCTTGAAATGTTGCTGTTGGCTAGGGATTGGGTTCAGGCTATTTGGTCTTAAAATGTGGCCAGTAACCTGCTGCTATATGGTGGAATATTGTTAAAAGTTAGTCTTTTCTGCTCTCCAATGAATCACAATTCAGAATAAAGTATGATTTAGGTATaaggttaattgttttagtttttttgtccaTGTTAAGATTAATTAAGATTTTGTTTATGGTGTGTAGGTAATGCATTAAAGCATGCCTGCTTGAATTAGTTTAGTTTCAATTTCAATCTTGGGTTCTGCAGGAATTGTTCATGCATGTGACctgctttttcatttgaagtttGGATACTTTCCAGGTTTCTGgactttatttctgtttgtttgtggacCACATACTTATGTCCTCTTGACAGTGTCCTGGGAATCTAAATATGCGTGCTTTAGAGAAATCTAGATTAACAGCAGCTGTGTCAGAAATTCTGCTGCAGATCCACCAGAGGGAGGGCTAGTCCAAGGCAGTGTGTGGGAATGGGGACTCTTCAATGcaagatcatttaaaaaggaaCCATAACAAATCCTACATTTGCAATTGTGTGTTCCTAATCTTTGAGTTGCTTCTTCGATAACTGATTCAGGTGTGTAAGCCATCATTCTAGTGTTCACTTTTGGTtctattgacttttttttttccatgactaTTAAGACTGAATGTAGATTGTATAGTGATTTTGTctgaaacaatatattaaatcaataccATGACACACTTAATGGCATTTATATCTTACCCTCTATCTGATTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106162 lncRNA upstream 33723 14034215 ~ 14035662 (+) True G85090
TU106156 lncRNA upstream 50444 14016133 ~ 14018941 (+) False AMCG00021296
TU106138 lncRNA upstream 66966 14000596 ~ 14002419 (+) True G85069
TU106122 lncRNA upstream 105161 13963109 ~ 13964224 (+) True G85056
TU106064 lncRNA upstream 151514 13869562 ~ 13917871 (+) True G85013
TU106180 lncRNA downstream 36402 14109527 ~ 14152543 (+) True G85098
TU106304 lncRNA downstream 299595 14372720 ~ 14373557 (+) True G85185
TU106330 lncRNA downstream 383503 14456628 ~ 14495849 (+) True G85202
TU106507 lncRNA downstream 1053642 15126767 ~ 15127233 (+) True G85344
TU106508 lncRNA downstream 1054164 15127289 ~ 15127965 (+) True G85345
AMCG00021295 mRNA upstream 993 14063972 ~ 14068392 (+) True AMCG00021295
AMCG00021293 mRNA upstream 13404 14053219 ~ 14055981 (+) True AMCG00021293
AMCG00021294 mRNA upstream 21584 14041440 ~ 14047801 (+) True AMCG00021294
AMCG00021296 mRNA upstream 35828 14016133 ~ 14033557 (+) True AMCG00021296
AMCG00021297 mRNA upstream 72777 13987124 ~ 13996608 (+) True AMCG00021297
AMCG00021306 mRNA downstream 7425 14080550 ~ 14105940 (+) True AMCG00021306
AMCG00021305 mRNA downstream 37333 14110458 ~ 14117266 (+) True AMCG00021305
AMCG00021312 mRNA downstream 106053 14179178 ~ 14197672 (+) True AMCG00021312
AMCG00021317 mRNA downstream 248760 14321885 ~ 14339956 (+) True AMCG00021317
AMCG00021322 mRNA downstream 417008 14490133 ~ 14493431 (+) True AMCG00021322
TU105723 other upstream 1968678 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 3082211 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 4645966 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 5435975 8631727 ~ 8633410 (+) True G84301
TU104814 other upstream 6948148 7115381 ~ 7121237 (+) False AMCG00021150
TU106850 other downstream 1990475 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 2517056 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 2583519 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 2583519 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 2924752 16997877 ~ 17004131 (+) True G85869

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2611386 True 375 lncRNA 0.49 3 NC_050571.1 41232587 ~ 41235261 (-)
eurasian perch (Perca fluviatilis) TU145084 False 418 lncRNA 0.50 3 NC_053121.1 25279610 ~ 25282207 (+)