AMCG00021331 (atp11c)


Basic Information

Item Value
gene id AMCG00021331
gene name atp11c
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 14671252 ~ 14690119 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021331
GTTCAGCGGGGAAGAGAGGCGTGTGGACAGCAGGACGATCTACATTGGACACTGGCCGTGCCCTGGGACAGACACCTTCATCCCTCCCAAGTTCTGCGATAACAGGATTGTCTCCTCTAAGTACACCGTCTGGAACTTTCTGCCTAAGAATCTGTTTGAGCAGTTCAGGCGCATCGCCAATTTCTACTTCCTCATCATATTCCTGGTTCAGgTGATAGTGGACACTCCAACCAGCCCAGTGACGAGTGGTCTGCCTCTGTTCTTCGTCATCACTGTTACGGCCATCAAACAGggTTATGAAGACTGGCTGAGACACAAAGCTGACAACGAAGTGAATAAGTACTTGGTGAACGTGCTTGAAAATGGCGGGAGCGTGCGCAAGGAGAGCGAGAAGATCAAGGTGGGGGACATTGTGGAGGTGTTGGAGGACGAGACATTCCCTTGTGACCTCATCCTGCTGCAGTCCAGCCGAGACGACGACACCTGCTTTGTCACCACCGCCAGCCTGGATGGGGAGTCCAACCACAAGACGCATTTCACAGTGCCAGACATTCAGAGGGACCTGGATTCCCTCAATGCCAATATTGAGTGTGAACAACCCCAGCCAGACCTCTACAAGTTTGTTGGTCGAATGAATATCTATAAGGAGAATCAGGACTCTGCCGTAAGgTCTTTAGGGCCAGAAAACCTGCTTCTAAAAGGCGccactttaaaaaacaccaaGAAGGTTTATGGTGTGGCTGTATACACCGGGATGGAGACCAAGATGGCTTTGAACTACCAGGGCAAGTCGCAGAAGCGCTCTGCTGTGGAGAAATCCATCAATGCGTTCCTGATCGTGTACCTGTGCATCCTGATCAGCAAGGCTCTGGTCTGCACCACACTGAAGTACGTGTGGCAGAGCCATCCTGGCCACGATGAGCCCTGGTACAACCACAAGACGCAGAAGGAGAAGGACACCAACTTGTACCTGAAGATGTTCACTGACTTCCTCTCGTTCATGGTCCTGTTCAACTTCATCATCCCCGTGTCCATGTATGTGACGGTGGAGATGCAGAAGTTCCTTGGCTCTTTCTTCATCTCCTGGGACAAGGACTTCTACGACCCAGAGATCAAGGAGGGGGCGCTGGTCAACACCTCTGACCTCAATGAGGAGCTGGGTCAGGTGGAGTATGTGTTCACGGACAAGACCGGAACCCTGACCCAGAACAACATGGAATTCATCGAGTGCTGCATCGATGGCTTCCAGTACAACTACCGGGACTCCCGAACTGAGCTGGATGGGTTCTGTACCACCGATGGGCCCATCAGCAAGCTGCACGAGAAGGCGGGCAGGgagAAGGAGGAATTGTTTCTGCGAGCGCTGTGCCTGTGCCACACTGTGCAGGTGAAGGAGTCTTTGCAGGCTGATGGAGTGGACGAAGTGGATGGGGTGGATGGAGTGGACGGGAACCCTTCCTCCTCCCCCGAACAGTGCTGCTACATTGCCTCTTCCCCCGACGAGGTGGCGCTGGTCAAAGGAGCAATGAAGTATGAACTTCTCCATGTGTTGAACTTTGACCCCGTGCGAAGGCGAATGAGTGTGATCGTGAAAACGAAGAGAGgggaaatctttctgttttgtaaaggtGCGGACTCGTCCATATTCCCACGTGTCCGGTTGGAGGAAGTGGAGAGGATACGGATGCATGTGGACCGCAATGCCATGGAGGGGTACCGGACATTGTGCGTAGCGTACAGGCAGCTGAGCCAAGAGGAGTACAAGAGGGCGAATGCAGGGTTGGTGGAGGCCAGACTAGCACTGCAGGACCGCGAGGAGAAGCTGGGGGCAGTGTACGATCAGGTGGAGAGGGACATGAAGCTCATCGGGGCAACTGCAGTGGAGGACAGGCTGCAGGAGGAGGCTGCGGAAACCATGGAGGCGCTGCATGGGGCTGGAATGAAGGTTTGGGTCCTCACTGGGGACAAGATGGAGACGGCCAAGTCCACCTGCTACGCCTGCCGGCTCTTTCAGAGGAACACAGAGCTGCTGGAGCTAACCGTGCGCACGCTGGAGGAGGGTGGGCGCAAGAGGGAGGAGCGGCTGCACGAGCTGCTGGTAGACTACCACAAGAGGGCAGTGCAGGACGTGCCCCGCGACAAAGATAACGTCACCAACGTCTGCAGGAGCTGGTCAACGGGGGTCCAGGAGTTTGGGTTCATCATTGATGGTGCCACCCTGTCACTGGTTCTGAACGCCCGCTCTGAGGCCAGCACCAGCCACTACAAGAGCATGTTCCTGCAGATCTGTCAGAACTGTACGGCCGTGCTGTGCTGTCGAATGGCGCCCTTGCAGAAAGCTCAGATTGTGAAGCTGGTGAAGAATTCAAAAGGTAGCCCTATCACTCTGTCAATAGGTGATGGGGCCAACGATGTCAGTATGATTCTGGAGGCTCACGTTGGCATTGGTGTGAAAGGCAAGGAGGGGCGGCAGGCAGTGCGGAACAGCGACTACGCCATCCCCAAACTCAAGCACCTTAAAAAGCTGCTGCTGGGTCACGGGCACCTCTATTACGTGAGGATCGCTAACCTGGTGCAGTACTTCTTCTACAAGAATCTTTGCTTCATTTTACCTCAGTTCCTGTACCAGTTTTTCTGTGGATATTCACAGCAACCCCTGTACGACGCAGCCTACCTGACGATGTACAATATCTGCTTCACCTCTATGCCCATCCTGGCTTACAGCCTGCTGGAGCAGCACATCTGCATTGAGACCCTACTGGAGGTGGCACCACTCTACAGAGAGAATGCCAAGAACGCCATGCTGCGTTGGCGCCCGTTCTTGTACTGGACAGTGCTGGGGATCTTCCAGGGGCTCGTCTTCTTTTTCGGGGTGCACCACCTCTTCAGCAACCCAGCCCTGCAGGACAACGGCCAGCTGGCTCTGGACACCAGACACTGGACCTGGATTAATCATTTTGTGATCTGGGGCTCCTTGGCCTTCTACGTCTTCTTCAGTTTCTTCTGGGGGGGAATCATATGGCCCTTCCTCAAACAGCAGCGGATGTATTTCGTCTTTGCCAACATGCTGAGCTCCGTGTCGGCCTGGCTCATCATCATCCTCCTCATCGTGATCAGCCTGCTCCCTGACATCCTGCTGGTTGTCATCCGCCATCCCCAGGGCCCCGCCCCTCGCCAGAAGAAGCCCGGTCAGTCGAACGCGGGGGGGGTCCGGTCTCCCCGATCTTCAGCCAGACCCCTGCTCTTGAGAACCTTTTCAGAGGAGTACAATACTGTCCTTTGA

Function

symbol description
atp11c Predicted to enable ATPase-coupled intramembrane lipid transporter activity. Predicted to be involved in phospholipid translocation. Predicted to act upstream of or within phospholipid transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including endoplasmic reticulum; recycling endosome; and trans-Golgi network. Is expressed in several structures, including head; hindbrain; liver; olfactory pit; and pectoral fin bud. Human ortholog(s) of this gene implicated in X-linked congenital hemolytic anemia. Orthologous to human ATP11C (ATPase phospholipid transporting 11C).

NR:

description
PREDICTED: probable phospholipid-transporting ATPase IG isoform X2

GO: NA

KEGG:

id description
K01530 E7.6.2.1; phospholipid-translocating ATPase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021331 True 3283 mRNA 0.55 26 14671252 14690119

Neighbor

gene id symbol gene type direction distance location
AMCG00021329 sox2,sox3,LOC105029621,LOC106604738 coding upstream 75064 14595280 ~ 14596188 (+)
AMCG00021324 NA coding upstream 109762 14558129 ~ 14561490 (+)
AMCG00021323 NA coding upstream 118462 14532782 ~ 14552790 (+)
AMCG00021322 pdzd11 coding upstream 177821 14490133 ~ 14493431 (+)
AMCG00021317 NA coding upstream 331296 14321885 ~ 14339956 (+)
AMCG00021330 NA coding downstream 6468 14696587 ~ 14731003 (+)
AMCG00021334 fgf13a,fgf13,LOC107658011,LOC107601138 coding downstream 167115 14857234 ~ 14866579 (+)
AMCG00021333 fgf13,LOC107744562,LOC102775774 coding downstream 190844 14880963 ~ 14883088 (+)
AMCG00021335 NA coding downstream 348847 15038966 ~ 15042078 (+)
AMCG00021339 NA coding downstream 431591 15121710 ~ 15122963 (+)
G85202 NA non-coding upstream 175403 14456628 ~ 14495849 (+)
G85185 dlg3 non-coding upstream 297695 14372720 ~ 14373557 (+)
G85098 slc25a5,LOC107378486,LOC104931197,LOC107748177,LOC105925769 non-coding upstream 518709 14109527 ~ 14152543 (+)
G85090 NA non-coding upstream 635590 14034215 ~ 14035662 (+)
G85069 NA non-coding upstream 668833 14000596 ~ 14002419 (+)
G85344 NA non-coding downstream 436648 15126767 ~ 15127233 (+)
G85345 NA non-coding downstream 437170 15127289 ~ 15127965 (+)
G85380 NA non-coding downstream 566329 15256448 ~ 15260965 (+)
G85381 NA non-coding downstream 567840 15257959 ~ 15259462 (+)
G85412 NA non-coding downstream 715657 15405776 ~ 15410610 (+)
AMCG00021292 NA other upstream 598127 14069330 ~ 14073125 (+)
AMCG00021296 NA other upstream 637695 14016133 ~ 14033557 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 1233844 13435307 ~ 13437408 (+)
G84749 NA other upstream 2570545 12075345 ~ 12100707 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other upstream 3684078 10963148 ~ 10987174 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other downstream 738358 15428477 ~ 15432364 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other downstream 1373380 16063499 ~ 16073621 (+)
G85764 LOC103366846,LOC106930986 other downstream 1900062 16590181 ~ 16592973 (+)
G85787 NA other downstream 1966525 16656644 ~ 16714038 (+)
G85869 NA other downstream 2307758 16997877 ~ 17004131 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location