cul4b (cul4b,LOC107664345,LOC107752014,LOC107550760,LOC107744545)


Basic Information

Item Value
gene id cul4b
gene name cul4b,LOC107664345,LOC107752014,LOC107550760,LOC107744545
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056712.1
NCBI id CM032081.1
chromosome length 26701998
location 21321674 ~ 21330975 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043257198.1
cacaaaaaaaacatcaatgtaATGATACTGAAATGTTTAGCTTGGATGTTGTTATTCACAAAGGCTAGTGCGAGAGTTTTGAGACTGCTCTGCGCGCGATGCATTATCGTCCCCTGGTGGAGGAGACCGGAAACGCCAGGCCTCGCGCTTAACCAACGCGCTTCAACAGCAGCTGCGCAACGGTTGAAAGTACTTCCGGCGGGTCAGCGTCGCCTCTTAGAAAAGTTACTATTTCCCCGCGGACTTTTTCTCAAACCCAAAATACCAGCGTATCTCCCGAGCGGAAAGACGGCGTCCGGCAGAATGCTTTAACGCAAACAGTCCTCGGCGAAAAGCAGTTTGTGATCCGGCGGACTTTGTGCAGCGCGCCGGAGTGCGCGCGCGAGAGAGGAAGCAGTATTCAACCATCTTTCCTCTGCTGGCAATAACAAGAACAGAGAAGGGTCCAAGTGGGACTGCACTTCTCAATTTATCCTCCTTTTCTCCTTATTCACACTCGGAGCCGCGAGGTTGCACTCCCCCCGACCGAGACCGAGGAATATAAAGCGTCCACACCCGGGATCGTAGCATTAGTAGATTAGCGATTTGATTTggtatttcttttttcatgtttccAACAGGTTTACCTTCCCCTAATCCCCCACCGCCAGCCCAAGAGCCCAGACCGGCAGCTTCTGATGTTCACAACGACAGTAGCTTAACGTCTTCTAAGAAGAGGAAAATTAACAGTTCAGAGAAGGAAGACATTGATTCAATATCTTCGTCTCCTAAAGCCATTTGTAATTCCTCCTCAACAACGTCCAGCTCTTCCAGttcacagcagcagcagcagcacatcCAGAAGAAGTTGAGGTTCGAAGATCCGCTGGATTTGATCGGACTGGATGTGAAGATGGCCGAGGAGTCGTGTAACTCTGCTGAATCGTGTTCAAAGACGAGAAATGTGTTCCTGCCTGGAGGTGTCGGGCATCATGCTAACGGACTGACCAAGTCTGCGGGATCCGCCACCTTCTCCAACAGTAAACCCGGTGCTGCAAAGAAACTTGTTATCAAGAACTTTAAAGAAAAGCCAAAATTACCAGAGAATTATACGAATGAGACCTGGCAGAAGCTGAAGGAGGCAGTAGAGGCCATACAAAACAGCACTTCAATAAAGTACAATCTAGAGGAGCTCTATCAGGCTGTTGAAAATTTGTGCTCTCATAAGATATCTGCCAAGCTCTATAAACAGCTCAGAGTGGTCTGTGAAGACCATATCAAGGCACAGATTGACCAGTTCAGGGAGGATGCCCTAGACAGCGTTCTGTTCCTCAAGAAAATAGATAAATGTTGGCAAGATCACTGCAGACAAATGatcaTGATTAGgagtatttttctgtttttggatCGCACATATGTTTTACAAAATTCAATGCTGCCATCAATCTGGGACATGGGCTTGGAGTTGTTTCGTTTCTATATCATCAGCGACCTGAAGGTGCAGAGTAAGACAATCGATGGGATACTGCTTCTTATTGAAAGAGAGCGGAGTGGAGAGGCCGTAGACCGCAGTCTCCTGAGGAGTCTTTTGAGCATGCTCTCAGATCTGCAGATTTATCAGGATTCATTCGAGCAGCGCTTTCTGGAGGAGACAAATCGACTGTATGCTGCAGAGGGCCAGAGACTCATGCAGGAAAGAGAGGTGCCAGAGTATCTCCATCATGTCAACAAACGTCTGGAAGAGGAAGCAGATAGAGTCATTACATACTTAGACCAGAGCACACAaaaaTCCCTTATTGCCACAGTAGAAAAGCAGCTGCTTGGAGAGCACCTCACTGCAATACTTCAGAAAGGTTTGAATAACCTGCTGGATGAGAACCGTATTCAAGACCTGTCTCTGCTGTACCAGCTCTTCAGTCGTGTGAAGGGAGGCGTGCAGGTGCTTCTGCAGCACTGGATCGAGTACATCAAGGCCTTTGGAAGCACAATCGTCATCAACCCAGAGAAAGACAAGACAATGGTTCAAGAGCTTTTGGATTTCAAGGATAAAGTCGATCACATCATTGATGTGTGTTTCATGAAGAATGAGAAGTTTGTTAATGGCATGAAGGAGGCTTTCGAGACCTTTATCAATAAACGGCCAAACAAACCTGCTGAGCTCATAGCAAAATATGTGGATTCAAAGCTCCGTGCTGGGAATAAAGAAGCGACTGATGAGGAACTTGAGAAAATGTTGGACAAGATAATGATCATATTCAGGTTCATTTATgGCAAAGATGTTTTTGAGGCCTTCTACAAGAAAGACTTGGCAAAGAGGTTACTGGTGGGAAAGAGTGCCTCTGTAGACGCAGAGAAATCAATGCTGTCAAAACTAAAGCATGaatgTGGTGCTGCATTTACCAGTAAGCTTGAAGGGATGTTCAAAGATATGGAGCTGTCAAAAGATATTATGGTGCAATTCAAACAGCACATGCAATGCCAAAATATTCCTGGGAACATTGAGCTGACAGTGAACATCCTCACTATGGGTTATTGGCCAACATATGTACCCATGGAAGTACATCTGCCTCCAGAGATGGTGAGATTGCAGGAGATTTTCAAAACGTTTTACCTGGGCAAACACAGTGGACGAAAACTTCAGTGGCAGTCTACGTTAGGACATTGTGTTTTAAAGGCAGAATTTAAAGAgGGCAAAAAAGAGCTGCAGGTATCCCTGTTTCAGACGTTAGTTCTGCTGATGTTTAATGAAGGAGAGGAGTTCTCTCTGGAGGATATTAAACTTGCTACAGGCATTGAGGATGGTGAGCTCAGGCGGACTCTACAGTCACTGGCCTGTGGGAAGGCGCGTGTCCTTACCAAAACCCCAAAGAGTAAAGACGTGGAGGATGGAGACAAGTTCTCTTGTAATGATGATTTCAAACACAAACTCTTCAGGATTAAAATCAACCAGATTCAGATGAAAGAAACGGTGGAGGAGCAAGCCAGCACTACAGAAAGAGTATTCCAGGACCGCCAGTACCAAATCGATGCTGCCATTGTTCGAATCATGAAGATGAGGAAAACTCTCAGCCATAACCTTCTGGTGTCTGAAGTGTACAACCAACTTAAATTCCCAGTCAAGCCTGCTGATCTGAAGAAGAGGATAGAGTCACTTATTGACAGGGACTACATGGAAAGGGATAAGGAAAATCCCAATCAATACAACTACGTGGCTTagaaagcaagagagagagagagagagcgagagagagaatgagagggGTAGATGAGGGATGTTAGAAATGACAGGAGGAGGCTGTTCTCAGTGATGTTGTTTACTTCCCTTAGCCCATGGAACCCCTTGTTCCAGGTTTTGTTCACTTAAACATCTTCACCCCAGTGACCAACAACTGAATCCGTTTTCTCTCCATGGCTTCGacagtatgttttatttctgtcacaATGGCATGTCCAattagaagaaaagaaaatacagaattatTTTGTTAAGATGCTTCTGAGAATTGGACTAGCCCaagcttaaaaagaaaagttatttattttcagacttGGCTCCACGGCTTTTGTTTGTCtctggcatgtttttttttttttttttttttttccttcatggTTTATTCACGCAAACATCAGAACATAGTGCCGTATAACCTGTGCAAAGAAAACCATCACCAAATTGAACTGAATTTGACAGTCAGTGTTGTATTGGATAGCAGCGTGTGAAAGCAGGTTTTCTCTTTGCCAATGTTTGTACAAAGAAAAGAAGATTCAGCTGATTGGTCACAAGCAATTTATGTTCTGTGAATGTGATTTACTGATAAAATAGAACAATTGAGGATGATTGGACATTTCACAGTATGTGCCAAGATTAGATAAAACCAAgcacttgttttgtttgtaggaATGTTAACGCTGCTAAACACTAACTTGTTTATCTTCCTCCTTTTTCCCTCCTTGCTTACATCTCACATTTCCTCctcttgtttattttgtatatacattttacacacaacTTTGATGTTTGACACTCTCGACTACATTGCAACTGCATTCTGTCTCCCCCGGAAACTCAGAACAAGCACAGCAGCAGCATTTTATCATTCTAGTGTTTCCAAGTTTATATAACCCTTGAGTTCTGAATTAGGCCCGTATACTGAGAAGCTCCTCTGTGTGGCATCACTGGATCTGTCTGTGGAATTTTTGGCAATGGTGTTTTGAGAAATCATACTTAAGTGGACAGTCGTCCAGTGTCTGGAAAAAgtatgcttgtttttattgccTCAGAATAAACAACTGTATGTGTTTCCATGA

Function

symbol description
cul4b Predicted to enable ubiquitin protein ligase binding activity and ubiquitin-protein transferase activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; cellular response to DNA damage stimulus; and protein ubiquitination. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be part of Cul4B-RING E3 ubiquitin ligase complex. Human ortholog(s) of this gene implicated in syndromic X-linked intellectual disability Cabezas type. Orthologous to human CUL4B (cullin 4B).

NR:

description
PREDICTED: cullin-4B

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0031461 cullin-RING ubiquitin ligase complex cellular_component
GO:0031625 ubiquitin protein ligase binding molecular_function

KEGG:

id description
K10609 CUL4; cullin 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043257198.1 True 4290 mRNA 0.44 20 21321674 21330975

Neighbor

gene id symbol gene type direction distance location
atp1b4 LOC107658137,LOC107664337,LOC107560232,LOC107550763,LOC107752012,LOC107744544 coding upstream 8979 21306413 ~ 21312695 (+)
zbtb33 LOC107744540,LOC107658128,LOC107550727,LOC107560259 coding upstream 24901 21293110 ~ 21296773 (+)
sowahd LOC107658138,LOC107744537,LOC107550745,LOC107561507,LOC107752086,LOC107664331 coding upstream 42482 21277027 ~ 21279192 (+)
pdzd11 pdzd11,LOC107560372,LOC107752002 coding upstream 79680 21239988 ~ 21241994 (+)
tex11 tex11 coding upstream 170184 21139957 ~ 21151490 (+)
mcts1 mcts1,LOC107550743,LOC107664321,LOC107561487 coding downstream 666 21331641 ~ 21334268 (+)
zdhhc9 zdhhc9,LOC107744547,LOC107752016,LOC105893011 coding downstream 9390 21340365 ~ 21364666 (+)
clic2 clic2,LOC107658143,LOC107550754,LOC107664358,LOC107560166 coding downstream 168180 21499155 ~ 21504865 (+)
LOC122358007 NA coding downstream 197479 21528454 ~ 21530829 (+)
med7 med7,LOC107744582,LOC107669063,LOC107752091,LOC107664325,LOC107561400 coding downstream 237552 21568527 ~ 21570114 (+)
G101341 NA non-coding upstream 38577 21281835 ~ 21283097 (+)
G101322 NA non-coding upstream 41061 21256081 ~ 21280613 (+)
G101336 NA non-coding upstream 65657 21254879 ~ 21256017 (+)
G101326 stard14,LOC107550772,LOC107744532,LOC107658124,LOC107752001,LOC107664324,LOC107560366 non-coding upstream 74654 21242214 ~ 21247020 (+)
G101320 dlg3 non-coding upstream 142844 21177046 ~ 21178830 (+)
G101441 NA non-coding downstream 70004 21400979 ~ 21401346 (+)
G101443 NA non-coding downstream 71393 21402368 ~ 21402618 (+)
G101454 NA non-coding downstream 88883 21419858 ~ 21421575 (+)
G101455 NA non-coding downstream 91224 21422199 ~ 21422446 (+)
G101476 NA non-coding downstream 119994 21450969 ~ 21508931 (+)
ndufa1 NA other upstream 33933 21287050 ~ 21287741 (+)
G101250 slc25a5,LOC107658113,LOC103141681,LOC103475848,LOC100712014,LOC107560428,LOC107751991,LOC107744527,LOC107550775,LOC102232717 other upstream 269242 20956794 ~ 21052432 (+)
G101246 sox3,LOC107751983,LOC105029621,LOC106611736 other upstream 342275 20930483 ~ 20979399 (+)
LOC122358150 LOC107692971,LOC107557295,LOC107689229,LOC107746220 other upstream 708140 20600673 ~ 20613534 (+)
G100926 NA other upstream 1971124 19349259 ~ 19350550 (+)
G101440 NA other downstream 69352 21400327 ~ 21400753 (+)
apln NA other downstream 91737 21422712 ~ 21443698 (+)
tmsb2 NA other downstream 426481 21757456 ~ 21759547 (+)
LOC122357535 wnt8-2,LOC107669112,LOC107743919,LOC107752032,LOC107602559,LOC107664333,LOC107568688,LOC106604410 other downstream 434666 21765641 ~ 21767331 (+)
gria2b gria2b,gria2,LOC107554451,LOC107723812,LOC107740107,LOC107669079,LOC108411138,LOC107662960 other downstream 951316 22282291 ~ 22310841 (+)

Expression


Co-expression Network