tspan7 (tspan7,LOC107680992,LOC107688694,LOC107724838,LOC107560449,LOC107740175,LOC107593221)


Basic Information

Item Value
gene id tspan7
gene name tspan7,LOC107680992,LOC107688694,LOC107724838,LOC107560449,LOC107740175,LOC107593221
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056712.1
NCBI id CM032081.1
chromosome length 26701998
location 24016922 ~ 24021170 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043257293.1
GGAAAGACTCCACAGcgcccatcatcatcatcatcatcatcatcaccaccaccgCTCAGTTCCCAAACAAACTTTACCAACTCACACTCCAATCTGCAACTTTTCCTCCAGCACTCCCCATCGAAAACTCCCGTCGCCAGCCAGATCCGTTgggaaaacaaaagcagaaatgtccCCTCCGTCCGCACGGCTTCAAACCAAACCCGTGATAACGTGTCTGAAGACGTTTCTGATCTCGTACAGTCTGATTTTCTGGTTCACAGGAGTGATCTTATTGGCTGTTGGAGTATGGGGAAAGGTTAATTTGGAGTTTGACCTCCTCCTGACTTCAGACAAGGGCACCAATGCACCGTATGTCCTCATTGGGACCGGAGCCGTCATCATCATCTTCGGGTTGTTCGGTTGCTTCGCCACCTGCCGTGGAAGTCCGTGGATGCTGAAGCTGTATGCTATGTTCCTGACTCTTGTGTTCTTAGCTGAACTAGTGGCAGGCATATCCGGCTTTATATTTAGACATGAgATTAAAGCGGTGCTTCAAGGTGTCTATAACAAAGCTGAATCGGTCTACAGTGGTAAGGGTAGCGAAGATCTGGACAGAATCCAGAGGACACTTCAATGCTGTGGAGAGAAGAACTACACCAGCTGGGCAAACACGGAGTACTTCAAAAAAGAGGGCATCCCCAAAAGCTGCTGCAACGTGACTGCTGGTGTAAACTGCACTTCTGCAGAACTTAAAGATCTTGGCACTGCTGCATCAGTGGTATATCAACAGGGCTGTTTCTCTCTGATGACTACAACCTTGGAGGCAAATCTTGGAATTATTGCTGGAATTTCTTTTGGAATCGCATTCTTCCAGCTCATTGGGATATTCCTGGCTTGTTGTCTGTCTCGCTACATCACCAACAATCAATACGAGATGGTTTAGTGATCCATGGGGTATCAACTGGAGATCACAGAGAGCTGAACCTGAGAGAAAAAGGGAAACCGTTTAGTTTCAGTGTTTTGTATGTGTGCCTTagctaaacatttcattttagagAATTTCTGACcgctttttaaagaatatttcttGTTGGTAACTACAAAGGGATACGaccattttgcatttgttttgaaaaataacagCGATTAGATTTATACTGAGGTTTGTAGGAAGCGCATGTGTTTTAGCCAGTGTTAAACCAAGAAACAGTTATGCAGATAAATAGTGTACTGCAAACCACGACCGTTTCATTGGCATTAACACGCGCTAAAACTTTGCATCTAGAAAAAcggtagattttttttgcatgcaaattCAACATTTGCAAAATAGGATGTTTTTGAGAATAACTTGATAATTTGACGTTCAAGATGTTATCCACTCAGCATGTTACATAGGGGGTTCTGATTGTCACCAGCAGTTCATTTTCAagagctttttttaatgcatgtacgTTCATTGCTGTTCGGATTGCTTCTGTGAAAATGATGTGGTTATCTGCGATTTCTCCGGTCTTTATTAATGCAGCTGTAGTGTTAATTGCAAGGTTGTTGAATGTCATGGGAGTGATGTTCTGAAGAGAAAAGTTGTAATGTCTCTTTGACTTTGTCTTCAAAATGTGAAATCTTTTGTCGCCCAGGTAACAATATTTAACGTGTACATACGAATCTACAAATATCATCATTATCTATACAGGGGTTGAGCTGTATTTAACGACATCTTTGCATTTGTAAGGAAAATAAATCGATGTATAATCTAGATTACTTTTTAAACTGTAACACTTATCTCTGGTCACTCCGGCATAAGCATACTGTTTAGTTTTTGCAGTAAGATAAAGCGCCCTCTGTGTTTTGTCAGCATATAAATTTACTTTTGGGGCATGTACACGTCGTATCTTTAATACAACAAATTGTCAAAAGCCTGTTCTTTTTGTGCAAACTGTAAAATGCTTAGGaacaataaacacttttctatGAG

Function

symbol description
tspan7 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability 58. Orthologous to several human genes including TSPAN6 (tetraspanin 6).

NR:

description
tetraspanin-7-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043257293.1 True 1960 mRNA 0.41 8 24016922 24021170

Neighbor

gene id symbol gene type direction distance location
itga6l LOC107680984,LOC107740164,LOC107593233 coding upstream 26824 23979011 ~ 23990098 (+)
fgfrl1b fgfrl1b,LOC107740189,LOC107680949,LOC107593239,LOC107724828,LOC107688696,LOC105908136 coding upstream 70147 23918709 ~ 23946775 (+)
pcdh10b pcdh10b,LOC107586058,LOC107730674,LOC107756512,LOC107570452,LOC107680982,LOC107678866 coding upstream 558372 23446370 ~ 23458550 (+)
eif4ea eif4ea,LOC107696296,LOC107730661,LOC107680975 coding upstream 750403 23262084 ~ 23266519 (+)
adh5 adh5,LOC107730660,LOC107586060,LOC107680974,LOC107696300,LOC107756510,LOC103043395 coding upstream 755194 23258039 ~ 23261728 (+)
mid1ip1l mid1ip1l,LOC107680990,LOC107740162,LOC107593217,LOC107560451,LOC107688693,LOC107724839 coding downstream 489 24021659 ~ 24023618 (+)
trnav-uac_6 NA coding downstream 30533 24051703 ~ 24051775 (+)
cstf2 cstf2,LOC107740160,LOC107680996,LOC107688691,LOC107724843 coding downstream 33536 24054706 ~ 24063276 (+)
arl13a tmem35a,arl13a,LOC107740158,LOC107560446,LOC107688689 coding downstream 54305 24075475 ~ 24086406 (+)
cenpi LOC107680969,LOC107740156,LOC107593211,LOC107560443,LOC107688687,LOC107724835 coding downstream 69096 24090266 ~ 24101348 (+)
LOC122358238 NA non-coding upstream 66357 23949157 ~ 23950565 (+)
LOC122357577 NA non-coding upstream 658230 23267299 ~ 23358692 (+)
G101784 NA non-coding upstream 1255284 22761292 ~ 22761638 (+)
G101761 rnf130,LOC107723823,LOC107740126,LOC107682892 non-coding upstream 1286691 22723934 ~ 22730231 (+)
G101756 NA non-coding upstream 1418967 22597686 ~ 22597955 (+)
G102019 NA non-coding downstream 248881 24270051 ~ 24270368 (+)
G102068 NA non-coding downstream 556018 24577188 ~ 24577506 (+)
G102069 NA non-coding downstream 557033 24578203 ~ 24578529 (+)
G102143 LOC107680971 non-coding downstream 1069342 25090512 ~ 25693470 (+)
G102148 NA non-coding downstream 1094700 25115870 ~ 25116759 (+)
nitr14b NA other upstream 44673 23970152 ~ 23972249 (+)
neil3 neil3 other upstream 1428389 22584190 ~ 22588533 (+)
gria2b gria2b,gria2,LOC107554451,LOC107723812,LOC107740107,LOC107669079,LOC108411138,LOC107662960 other upstream 1706081 22282291 ~ 22310841 (+)
LOC122357535 wnt8-2,LOC107669112,LOC107743919,LOC107752032,LOC107602559,LOC107664333,LOC107568688,LOC106604410 other upstream 2249591 21765641 ~ 21767331 (+)
tmsb2 NA other upstream 2257375 21757456 ~ 21759547 (+)
tmem35 tmem35a,tmem35,LOC107680989,LOC107740187,LOC107724834,LOC107688707 other downstream 65554 24086724 ~ 24089522 (+)
G102017 LOC107680957,LOC107593209,LOC107740154,LOC100534741 other downstream 195073 24216243 ~ 24216763 (+)
LOC122358267 LOC107593202,LOC107740141,LOC107680337,LOC107554835,LOC108268827,LOC105904295 other downstream 1036582 25057752 ~ 25059200 (+)
G102332 wdtc1,LOC107738793,LOC107673335 other downstream 2011809 26032979 ~ 26035638 (+)
gnrhr3 LOC107567517,LOC107673322,LOC108436550,LOC105908885 other downstream 2147388 26168558 ~ 26175734 (+)

Expression


Co-expression Network