pcdh10b (pcdh10b,LOC107586058,LOC107730674,LOC107756512,LOC107570452,LOC107680982,LOC107678866)


Basic Information

Item Value
gene id pcdh10b
gene name pcdh10b,LOC107586058,LOC107730674,LOC107756512,LOC107570452,LOC107680982,LOC107678866
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056712.1
NCBI id CM032081.1
chromosome length 26701998
location 23446370 ~ 23458550 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043257611.1
GAGCAAAGTGCTGTGCGTGTAAAGGATAGGCCTGTAGCATTTACTAAATGTACACTTATACGGATGATAATGAatggatatttttttcacaacttGATCGttcttctctctgactcattcTCATACGAACTCATCAGCCATTCAATCATTATGACCAGAAATCCCGCAGCTCTGACCAGGGGCGTGTCTATCCGCCACCAGGAGGCTTGACTGACGTAGGGCAGAGCCAATGAGGTTTGAGCTCTGCTGGTGCCGGGTGCTCCCATTGGTTGGCGAGGGGAGGGTGCTGCGGGAAAACCGAACAGCTAAGCGTTGATGCTTCAGTACTGTGCCAGCGGACCCCGCAGGAGCGCACGAGATATACCGGGACCTTTCAGATATCAGAGACTGTAGctctaatataaaatgtttttgttgaattgGCTCTGTGGATTATGATACTGTGTTTTATCACACGCCAACTGATATCTGTTAGTATCAGTGACAGTCTAATGTTGTAATGTTCACTTGTGCCAGAAATCCGCCGCGACTCTGAAGCCTGTTCGTGGAAGGAATCGCCTTGGGAAATCGGTCCTGTGTAAACCAGCACGCAGCATGGTTTTTGGCTGACAGCCCCGTTTAAGGAAAAATATTGCCCTGCGACCAAAGCCTTGCGCACGCCTGCGCGCCTTGCCTTGGAGAAGAGGGTGATGGTTTTGCTGCGTGCTCCTCGGAGATAAAATATTCCAAGTGTCCTTTCCGGAGTggagatgtttgtgtttttgctccTGCTGTGTCTCGCGGATGGGGTAGTTTCGCAGATACGTTACTCTGTGCCCGAGGAAGCGGAGCATGGCACATTCGTGGGGAATATCGCAGAGGATTTGGGACTGGACCTTACGAAACTTTCATCCCGCCGCTTTCAGGTGGTGCCCAGCTCGCGGACGCCGTACCTGGAAGTAAACTTGGAGAACGGGGTGCTTTTCGTGAACGAGAAAATCGACCGGGAGCGCATCTGTAAACAGAGCGCCAGCTGTTTGCTTCACCTGGAGGTGTTCCTGGAGAACCCGCTCGAGCTGTTTCGCGTGGAGATCGAGGTAGTGGACATCAACGACAACCCGCCGAGCTTTCCGGAGACAGACATTACCGTGGAAATATCCGAGAGCGCGACCCCGGGTACGCGCTTCCCGTTGGAGAGCGCCTTTGATCCGGATGTCGGTAGTAACGCATTGCGCACTTACGACATTACCAACAACAATTATTTCTACCTAGACGTGCAAACACAGACCGACGGCAACAAATTCGCAGAGCTGGTTTTGGAGAAGCCGCTTGATCGGGAACAGCAGGCGATGCACCGTTACGTCCTCACGGCCGTGGACGGCGGCCAGCCTCCGCGGACAGGTACAGCTCTGCTTGTGGTCAGAGTGCTCGACTCCAACGACAACGTCCCCGTGTTTGATCAGCCGGTGTACTCGGTTAACCTGGCCGAGAACGCGCCCGTGGGCACGCTCGTCATCCAGCTGAACGCGACCGACTCCGACGAGGGCCCGAACGGAGAGGTCATTTACTCGTTCAGCAACCACATCTCAAGCAGGGTCAAGGAACTGTTCGATATCGACGCCCGAACGGGCCGTATAGAGGTCAGAGGTGAGGTGGACTTCGAGGAGAGCAGTCTGTATCAGATTTACGTGCAAGCGAAAGACATGGGACCTAATGCCGTGCCCGCGCACTGTAAAGTTTTGGTCAAAGTGACGGACGTAAACGACAACGCACCGGAGATCATCTTCAGCACCGTCACGGAGTCGGTGAGCGAGAACGCGGCCACTGGCACCGTCATCGCGCTGCTCAGCATCACAGATAAAGACTCCGAAGACAACGGCCAGACGCATGTGGAGATTCTCGGAGACGTTCCTTTTAAACTCAAAACctctttcagaaattattacaCTATTGTGACTGACGGTCCTCTCAACCGAGAAACCGTGGAGGCATACACAGTCACCGTTGTTGCGAGAGATAAAGGGATACCATCTCTGGCTACCAGCAAATCGATCAAGGTGCACGTGTCGGACGAGAACGACAACGCGCCAACGTTTACGCAGCCCATTTATGATGTGTATGTGACTGAAAACAACGTTCCCGGTGCTTACATCTACGCTGTCAGTGCAGTCGATCCTGATGTCGGACAGAATGCTTATATAACTTACTCCATAGTGGAGTGTGAAATCCAGGGTATGTCTGTGGTCACCTATGTGTCCATCAACTCGGAGAATGGGTATCTGTACGCCCTCAGATCGTTCGATTATGAGCAACTGAAAGACTTCAGCTTCATGGTTCAAGCCAGAGACTCAGGCAGCCCCGAGCTATGGTCCAACGCCACAGTTAACGTCATTATAGTGGATCAAAACGATAACGCGCCGTCTGTGATTGCGCCTCTTGGAAAAAACGGCACTGCGCGGGAGCCTTTGCCGCGCTCTGCTGAGCCGGGCTACCTAGTCACTCGCATTGTCGCCATGGACGCGGATGATGAGAACGCGCGCTTGTCCTATAGTATACAGAGAGGTAACGAGAATGGGATGTTCCGAATGGACTGGCGCACCGGGGAATTGCGTACGGCCCGCCGGGTGTCAGTTAAAAGAGACCCGCAACAGCTGTACGAGTTGCTGATTGAGGTAAGAGATCACGGGCAGCCTCCTATGTCGTGCAGCGCGGTGGTGCAGGTGACGCTCGTGGACAGTCTCGTGGAGGGCCACAGTGGAGAGCGCGGCACGGCTAAGGCCAAAGACGCGTCGCTGGACTTGACGCTCATCCTCATCATCGCTCTGGGTTCCGTTTCTTTCATCTTCCTCCTCGCCATGATTGTGCTGGCCGTGCGCTGTCAAAAGGACAAAAAGCTGAACATCTACAGCACCTGCCTAGCGAGCGACTGCTGCTGCCTGGTGGGCTGCGGGTCTTGCGGGTCGGGCGGCTGCTGCGGTCGTCAGGCCCGGGCCGCccggaaaaaaaagaagctgagCAAATCGGACATCATGCTGGTCCAGAGCACTAATACAGCCAACGTAAGCGTGGCGAGCGCCGCGCAGGTGCCCGTGGAGGAGTCGGGGAGCTTCGGCTCGCTCCATCAAAGTCAGAACTACTGCTACCAGGTCTGTCTGACTCCGGAATCGGCCAAAACGGACCTCATGTTCCTGAAGGCCTGCAGCCCGTCGCGCAGCAACGACACCGAGCACAACCCGTGCGGAGCCATAGTGACCGGCTACACGGACCAACAGCAACCGGACATCATATCCAACGGCAGCCTGCTCTCCAGTGAGACAAAACACCAGAGAGCAGAGCTCAGTTATTTGGTGGACCGACCAAGGCGTGTTAACAGCTCTGCGTTCCAGGAGGCAGATATTGTGAGCTCTAAAGACAGCGGCCATGGAGACAGCGAGCAGGGAGACAGTGACCATGATGCCATGCATCGCGGACATTCCTCTGGGGCAGACCTCTTCTCCAACTGCACGGAGGAGTGCAAAGCCCTCGGCCACTCAGATCGCTGCTGGATGCCAAGTTTTGTGCCCACCGAGGCACGACAGGGCGCCGATTACCGCAGCAACCTGCACGTGCCGGGCATGGACTCTGTGCCCGACTCTGAGGTATTTGAGGGCGAGACGCTGGCGGGCGATCAGTCATTCTCAACCTTTGGCAAAGAGACGCCACACCACCCCAACCAGATGCACCAACACCAACATCAACACCATCAACACCACCTCAATGCTTCCACGCTAGAGAGGAAAGAGTTCGATGCACTTCTGTGTAACTCTCGCATGCCTTACAAAGCCGCCTGTCTGTcGCGGAAAAGGATATGCTAGCTCTTTCCGAGTGGACATACCAGAGACGGCGTGATTTTGCACAATCAGTAAAACTGATGGAAATGCAAAGAGCATCAAGTTTTCAGACTCTATTTCCAGAGACGTCAGATGATCGTGCGTTCCCGAAGGCTTCCGGAGCCTCTAGGACCTCAACAAACTTGATGAAAAAGTCGGACTCGCAGAGATAGATGCAACGCCGAGCGGCTGGACATAACGCGCTTCTCAGCAGGACTGAGACGGAGGACTAAACTAAACCGTTAAAATACACGGAGGATAGGAAGACAAGGAGAGAAACAAGAGGACGGCTATTCCTCTTGGCTTCTGCGTGTGCCTGTTTACAGCACTACTTACtgtacatcataaaaaaaaaaaaaaaaaaatgacaaaaaaagacaatgagAACTATGACGAGAACCACCAACGAAAACTACAAAAATGGAGATATATTCACTGAGCCCTTTAGTtgtttatgtacacacacacaccactgaaAAGCCAATTGTACAGGAAATTCATTTGTGCATTACAAATGCAATATTGTTCTTTTAGACATGactgtttttatattctgtgtgcggctgtgtgtgtgtgataaggTGTTTTCCCTAAATCTATTCCAACTCtttgtcaaaagaaaaaaaaaaagcaacggATTCCACggagggatttttttttttcgtcaggGTTAAGTGTTTAACGTTGTGAGCAGGACAGCTGTGGCCTAAATCTTACTCTCTCAGACAATACGTAGGTTATATCACGTGTGAGAAGTCTTAACTGTACtcttttaaacttcaaaataaatataaatctatatctataaa

Function

symbol description
pcdh10b Predicted to enable calcium ion binding activity. Acts upstream of or within paraxial mesoderm development; somitogenesis; and thalamus development. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including anterior axial hypoblast; mesoderm; nervous system; spinal cord neural tube; and trunk.

NR:

description
PREDICTED: protocadherin-10-like isoform X1

GO:

id name namespace
GO:0021794 thalamus development biological_process
GO:0001756 somitogenesis biological_process
GO:0048339 paraxial mesoderm development biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K16499 PCDHD2; protocadherin delta 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043257611.1 True 4657 mRNA 0.52 6 23446370 23458550

Neighbor

gene id symbol gene type direction distance location
eif4ea eif4ea,LOC107696296,LOC107730661,LOC107680975 coding upstream 179851 23262084 ~ 23266519 (+)
adh5 adh5,LOC107730660,LOC107586060,LOC107680974,LOC107696300,LOC107756510,LOC103043395 coding upstream 184642 23258039 ~ 23261728 (+)
gar1 gar1,LOC106513240 coding upstream 189099 23254487 ~ 23257271 (+)
lect2.1 LOC107669062,LOC107692812,LOC107567336,LOC107562820,LOC107740129,LOC107723827,LOC107562821 coding upstream 673042 22771046 ~ 22773328 (+)
si:ch211-132p1.2 LOC107669066,LOC107567335,LOC107740128,LOC107692817,LOC107723802,LOC107562819 coding upstream 677456 22762456 ~ 22768914 (+)
fgfrl1b fgfrl1b,LOC107740189,LOC107680949,LOC107593239,LOC107724828,LOC107688696,LOC105908136 coding downstream 460159 23918709 ~ 23946775 (+)
itga6l LOC107680984,LOC107740164,LOC107593233 coding downstream 520461 23979011 ~ 23990098 (+)
tspan7 tspan7,LOC107680992,LOC107688694,LOC107724838,LOC107560449,LOC107740175,LOC107593221 coding downstream 558372 24016922 ~ 24021170 (+)
mid1ip1l mid1ip1l,LOC107680990,LOC107740162,LOC107593217,LOC107560451,LOC107688693,LOC107724839 coding downstream 563109 24021659 ~ 24023618 (+)
trnav-uac_6 NA coding downstream 593153 24051703 ~ 24051775 (+)
LOC122357577 NA non-coding upstream 87678 23267299 ~ 23358692 (+)
G101784 NA non-coding upstream 684732 22761292 ~ 22761638 (+)
G101761 rnf130,LOC107723823,LOC107740126,LOC107682892 non-coding upstream 716139 22723934 ~ 22730231 (+)
G101756 NA non-coding upstream 848415 22597686 ~ 22597955 (+)
G101746 NA non-coding upstream 879672 22566171 ~ 22566698 (+)
LOC122358238 NA non-coding downstream 490607 23949157 ~ 23950565 (+)
G102019 NA non-coding downstream 811501 24270051 ~ 24270368 (+)
G102068 NA non-coding downstream 1118638 24577188 ~ 24577506 (+)
G102069 NA non-coding downstream 1119653 24578203 ~ 24578529 (+)
G102143 LOC107680971 non-coding downstream 1631962 25090512 ~ 25693470 (+)
neil3 neil3 other upstream 857837 22584190 ~ 22588533 (+)
gria2b gria2b,gria2,LOC107554451,LOC107723812,LOC107740107,LOC107669079,LOC108411138,LOC107662960 other upstream 1135529 22282291 ~ 22310841 (+)
LOC122357535 wnt8-2,LOC107669112,LOC107743919,LOC107752032,LOC107602559,LOC107664333,LOC107568688,LOC106604410 other upstream 1679039 21765641 ~ 21767331 (+)
tmsb2 NA other upstream 1686823 21757456 ~ 21759547 (+)
apln NA other upstream 2002672 21422712 ~ 21443698 (+)
nitr14b NA other downstream 511602 23970152 ~ 23972249 (+)
tmem35 tmem35a,tmem35,LOC107680989,LOC107740187,LOC107724834,LOC107688707 other downstream 628174 24086724 ~ 24089522 (+)
G102017 LOC107680957,LOC107593209,LOC107740154,LOC100534741 other downstream 757693 24216243 ~ 24216763 (+)
LOC122358267 LOC107593202,LOC107740141,LOC107680337,LOC107554835,LOC108268827,LOC105904295 other downstream 1599202 25057752 ~ 25059200 (+)
G102332 wdtc1,LOC107738793,LOC107673335 other downstream 2574429 26032979 ~ 26035638 (+)

Expression


Co-expression Network