G63956 (grid2,LOC107669587,LOC107711862,LOC107751431,LOC107680191)


Basic Information

Item Value
gene id G63956
gene name grid2,LOC107669587,LOC107711862,LOC107751431,LOC107680191
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 14128189 ~ 14128422 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU94663
CGACGGCACTCTGGAGCCCTTCCTTCGCGTCCACCAGGTCTCCACAGTGGCAATAAGACAGGAAAGCACCACACCGGCTGCGAGTACAAAGAAGACCCCAGCGAAGCTATGGATGTCCAAGGCACTGCCACTCTTTCGAGTGCCCACAGGGGAGTACAGGTCACACGGACTGTCCCGCGGCCACCACTTCAGCTTCAAGATGTCCATGTCTCCATTCTGCTGAAGCTCCAGGAT

Function

symbol description
grid2 Predicted to enable ionotropic glutamate receptor activity and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within ionotropic glutamate receptor signaling pathway. Predicted to be integral component of plasma membrane. Predicted to be active in postsynaptic membrane. Is expressed in brain and eye. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 18. Orthologous to human GRID2 (glutamate ionotropic receptor delta type subunit 2).

NR:

description
glutamate receptor ionotropic, delta-2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU94663 True 234 lncRNA 0.58 1 14128189 14128422

Neighbor

gene id symbol gene type direction distance location
cebpb cebpb,LOC107556312,LOC107669676,LOC107751442,LOC107594515,LOC107679873,LOC107711812 coding downstream 486707 13639945 ~ 13641482 (-)
adipor1b adipor1b,LOC107751445,LOC107679819,LOC107594512,LOC107711855 coding downstream 512851 13608854 ~ 13615338 (-)
LOC122351021 klhl12,LOC107679803,LOC107556315,LOC107711853,LOC107751446,LOC107594517 coding downstream 519912 13599250 ~ 13608277 (-)
tuba5 tuba8l,LOC108265838,LOC108425079,LOC107679810,LOC107711852,LOC107594520,LOC103031418 coding downstream 530342 13593701 ~ 13597847 (-)
kdm5bb LOC107751449,LOC107556320,LOC107711851 coding downstream 537013 13571079 ~ 13591176 (-)
LOC122350319 LOC107574771,LOC107751454,LOC107669655 coding upstream 44632 14173054 ~ 14175823 (-)
LOC122350320 prf1.5,LOC107751453,LOC107574770,LOC107594505,LOC107711865,LOC107679935 coding upstream 53110 14181532 ~ 14186141 (-)
mpeg1.1 mpeg1.1,LOC107724877,LOC107669601,LOC107602834,LOC107679909,LOC107724864,LOC107751428,LOC107602817 coding upstream 59007 14187429 ~ 14190244 (-)
LOC122349900 LOC107724883,LOC107580262,LOC107669607 coding upstream 65411 14193833 ~ 14194501 (-)
slc20a2 slc20a2,LOC107724891,LOC107669617,LOC107602837,LOC107594502,LOC107711867 coding upstream 96934 14225356 ~ 14259044 (-)
G63963 NA non-coding downstream 10187 14117730 ~ 14118002 (-)
G63962 grid2,LOC107669587,LOC107751431,LOC107711862,LOC107680191 non-coding downstream 28038 14099665 ~ 14100151 (-)
G63944 NA non-coding downstream 65449 14062497 ~ 14062740 (-)
G63942 NA non-coding downstream 121171 14006813 ~ 14007018 (-)
G63941 grid2,LOC107711862,LOC107669587,LOC107568412,LOC107594506 non-coding downstream 130223 13997682 ~ 13997966 (-)
G63955 grid2,LOC107568412,LOC107751431,LOC107594506,LOC107680191,LOC107711862 non-coding upstream 2969 14131391 ~ 14137423 (-)
G63975 NA non-coding upstream 74624 14203046 ~ 14203270 (-)
G63976 NA non-coding upstream 75220 14203642 ~ 14203921 (-)
G63979 NA non-coding upstream 136750 14265172 ~ 14265635 (-)
G63980 NA non-coding upstream 137304 14265726 ~ 14266043 (-)
G63933 LOC107556304,LOC107751435,LOC107594508 other downstream 264939 13809428 ~ 13863250 (-)
mc3r mc3r,LOC107751459,LOC107669608,LOC107711834,LOC107680356 other downstream 407675 13716628 ~ 13720514 (-)
tafa3b si:ch211-254n4.3,fam19a3,LOC107711931,LOC107591764,LOC107562776,LOC107669582,LOC102289964,LOC104918365,LOC106582736,LOC105921069,LOC106517667,LOC108231490,LOC106937909 other downstream 882059 13185867 ~ 13246130 (-)
zmynd12 zymnd12,LOC107591768,LOC107711949,LOC107679700 other downstream 1044817 12985654 ~ 13083372 (-)
foxp3a foxp3a,si:ch211-167b20.8,LOC107669635,LOC107731227,LOC107550508,LOC107711972,LOC107679368,LOC107591799,LOC107591800 other downstream 1624036 12489197 ~ 12504153 (-)
LOC122350784 zgc:162939,LOC107602843,LOC107674500,LOC107724903 other upstream 257178 14385600 ~ 14455243 (-)
slc20a1a slc20a1a,LOC107724894,LOC107711884,LOC107686402,LOC107667554,LOC107602858,LOC108440301 other upstream 595290 14723712 ~ 14731391 (-)
G64228 NA other upstream 651109 14779531 ~ 14781710 (-)
G64353 hmcn2,LOC107723245,LOC107659581,LOC107570300 other upstream 1155439 15283861 ~ 15284130 (-)
mvb12bb mvb12b,LOC107550570,LOC107753158,LOC107723228 other upstream 1520804 15649226 ~ 15700896 (-)

Expression


Co-expression Network