G608


Basic Information

Item Value
gene id G608
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 1877509 ~ 1894453 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU800
agtcagtgatcagtgagagtgtctacctgtaattaactctatataacattagaatattaaacccaaataaacactaataaagtcagtgatcagtgagagtgtctacctgtaattaactctatataacattagaatattaaacccaaataaacactaataaagtcagtgttcagtgagagtgtctacctgtaattaactctatataacattagaatactaaacccaaataaacattaataaagtcagtgatcagtgagagtgtctacctgtaa
>TU801
tcagtaagagtctctacctgtaattaactctatataacattagaatactaaacccaaataaacattaataaagtcagtgatcagtgagagtaagtgtctacctgtaattaactctatataacattagaatactaaacccaaataaacattaataaagtcagtgatcagtgagagagagtgtctacctgtaattaactctatataacattagaatactaaacccaaataaa

Function

GO: NA

KEGG:

id description
ko04371 Apelin signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU800 True 272 lncRNA 0.63 2 1877788 1878218
TU801 False 230 lncRNA 0.40 3 1877509 1894453

Neighbor

gene id symbol gene type direction distance location
LOC103041746 LOC103041746,LOC108432452,LOC107602511 coding downstream 14782 1860413 ~ 1862727 (-)
ndc1 ndc1 coding downstream 19285 1835741 ~ 1858224 (-)
LOC103044599 glis1,LOC107602512,LOC106952155 coding downstream 44477 1796561 ~ 1833032 (-)
LOC103045337 NA coding downstream 85381 1783204 ~ 1792128 (-)
best4 best4,LOC106569841,LOC108262062 coding downstream 104618 1764264 ~ 1772891 (-)
LOC103038761 NA coding upstream 58285 1952738 ~ 1967670 (-)
LOC103039897 NA coding upstream 104647 1999100 ~ 2005172 (-)
LOC103039590 LOC103039590 coding upstream 115816 2010269 ~ 2011178 (-)
LOC103039280 stk25b,LOC108432500,LOC107585675,LOC107722570,LOC108278137,LOC107693719,LOC107589848 coding upstream 144433 2038886 ~ 2052143 (-)
thap4 thap4 coding upstream 173525 2067978 ~ 2073643 (-)
G589 rps8,rps8a,LOC107674081,LOC107688507,LOC107602544 non-coding downstream 113886 1757980 ~ 1763623 (-)
G504 NA non-coding downstream 121195 1754379 ~ 1756314 (-)
G502 hectd3,LOC107729394 non-coding downstream 123655 1751182 ~ 1753854 (-)
G496 hectd3 non-coding downstream 139592 1736394 ~ 1737917 (-)
G476 ptbp1a,LOC107729315,LOC107584874,LOC108432475,LOC107602545,LOC107674042,LOC107688524,LOC107732511 non-coding downstream 354764 1511045 ~ 1522745 (-)
G616 sept2 non-coding upstream 122103 2016556 ~ 2035389 (-)
G644 NA non-coding upstream 172122 2066575 ~ 2067409 (-)
LOC111192756 NA non-coding upstream 182622 2077075 ~ 2079605 (-)
G653 NA non-coding upstream 197970 2092423 ~ 2092992 (-)
G655 NA non-coding upstream 201767 2096220 ~ 2101575 (-)
yipf1 yipf1 other downstream 4382 1864515 ~ 1873127 (-)
LOC111197534 NA other downstream 1021349 855579 ~ 856160 (-)
LOC103037308 LOC108440474,LOC108278112,LOC107585786,LOC107669856,LOC107745208 other downstream 1206794 589669 ~ 670715 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other upstream 26027 1920480 ~ 1928255 (-)
znf414 NA other upstream 529260 2423713 ~ 2434401 (-)
G807 NA other upstream 655763 2550216 ~ 2600511 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other upstream 1016301 2910754 ~ 2970340 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other upstream 1499751 3394204 ~ 3445386 (-)

Expression


Co-expression Network