LOC103039897


Basic Information

Item Value
gene id LOC103039897
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 1999100 ~ 2005172 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245171.2
CTGACCACTTCGCTGCCCTTCAGTCCAGAGAGTGAGAAACCATGGCGAACACCATCCTGCAGACCGCTGGCTTTGTTCTAGGACTGATCGGAGTGGCAGCGGTCATCGCCGCCACTGTTATGAACAACTGGAGCACTAAAGATCGGCAGGGCGACGTGGTGACCTCTGTCTACACCTATAAGGGACTGTGGCAGGACTGTGAAGTGTCCACCTCTGGGTTCACCGAGTGCCGGCCGCTGTACGGAATTCTGGGGTACTCAGGTGAGTTCCAGGCTGTGAGGGCGCTGATGGTGATCGGAGTTGTGCTGGGCTTAATCGCCACTCTAATCTCGCTGTTCTCtctgaaatgctttaaaatgggAAACACGGAGGTCTCCACCAAGGCCAAGATGACCCTGACGGCTGGCATCATGTTCGTCACCGCAGGCATCTGCGCCATTATTGGAGCGTCCATTTATGCCAACCAGATAGTGACAAGCTTCGTCCAGACCACCTACAACACTAATTATGGAGGGATGAACCAGATGCAGATGGAGGGGATGGGGATGAGCATGGCCACCACGTACACATTTGGACCCGCCCTCTTCGTGGCCTGGGTCGGAGCCGGCTTGCTGCTGATTGGAGGAGTTTTGAAGTGTGTAGCCTTCAAAGGGATGCATGTTGACAGCAAACCCGCCTATAATACAGTTGCTTACAGAGTTCCAGCCCAGTCCCGGTCAGCTGAGGAGAGCAGTGAGAGAGCGCAGAAATACGTATGAGGAGAAGAAGACACATTTTCTACTCCGAGAATATTTCTGCTTTATAGAATAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245171.2 True 811 mRNA 0.53 5 1999100 2005172

Neighbor

gene id symbol gene type direction distance location
LOC103038761 NA coding downstream 31430 1952738 ~ 1967670 (-)
LOC103041746 LOC103041746,LOC108432452,LOC107602511 coding downstream 136373 1860413 ~ 1862727 (-)
ndc1 ndc1 coding downstream 140876 1835741 ~ 1858224 (-)
LOC103044599 glis1,LOC107602512,LOC106952155 coding downstream 166068 1796561 ~ 1833032 (-)
LOC103045337 NA coding downstream 206972 1783204 ~ 1792128 (-)
LOC103039590 LOC103039590 coding upstream 5097 2010269 ~ 2011178 (-)
LOC103039280 stk25b,LOC108432500,LOC107585675,LOC107722570,LOC108278137,LOC107693719,LOC107589848 coding upstream 33714 2038886 ~ 2052143 (-)
thap4 thap4 coding upstream 62806 2067978 ~ 2073643 (-)
LOC103036651 LOC103036651,LOC108432502,LOC105899541,LOC105028795,LOC108278136,LOC107718120 coding upstream 98298 2103470 ~ 2112159 (-)
LOC103037376 NA coding upstream 319434 2324606 ~ 2372955 (-)
G608 NA non-coding downstream 104647 1877509 ~ 1894453 (-)
G589 rps8,rps8a,LOC107674081,LOC107688507,LOC107602544 non-coding downstream 235477 1757980 ~ 1763623 (-)
G504 NA non-coding downstream 242786 1754379 ~ 1756314 (-)
G502 hectd3,LOC107729394 non-coding downstream 245246 1751182 ~ 1753854 (-)
G496 hectd3 non-coding downstream 261183 1736394 ~ 1737917 (-)
G616 sept2 non-coding upstream 11384 2016556 ~ 2035389 (-)
G644 NA non-coding upstream 61403 2066575 ~ 2067409 (-)
LOC111192756 NA non-coding upstream 71903 2077075 ~ 2079605 (-)
G653 NA non-coding upstream 87251 2092423 ~ 2092992 (-)
G655 NA non-coding upstream 91048 2096220 ~ 2101575 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other downstream 70845 1920480 ~ 1928255 (-)
yipf1 yipf1 other downstream 125973 1864515 ~ 1873127 (-)
LOC111197534 NA other downstream 1142940 855579 ~ 856160 (-)
LOC103037308 LOC108440474,LOC108278112,LOC107585786,LOC107669856,LOC107745208 other downstream 1328385 589669 ~ 670715 (-)
znf414 NA other upstream 418541 2423713 ~ 2434401 (-)
G807 NA other upstream 545044 2550216 ~ 2600511 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other upstream 905582 2910754 ~ 2970340 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other upstream 1389032 3394204 ~ 3445386 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other upstream 1877198 3882370 ~ 3909671 (-)

Expression


Co-expression Network