LOC103032016 (arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524)


Basic Information

Item Value
gene id LOC103032016
gene name arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 2910754 ~ 2970340 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU1203
GCTGTAAGTGCTGTTTAGACTGAAGTGTTTTTCCTAAGCGATGCTCACATCAAACCTGATGGGGGCGCTGCAGGCTGTACTGAAAAACCCACCAATCAACACAAAGAACCAGAATGTGAAGgatCGGGCCGAGGGTCTGGTATTGAAAGTGCTGACGGCCTTTAAGAGCAGTGATATTGAGAAGGCGGTTCAGTCTCTGGATAAGAACAAAGTGGACCTCCTGATGAAGTACATCTACAAAGGCTTTGAACGGCCCTCAGAGAACAGCAGCGCAGTCCTGCTGCAGTGGCACGAAAAGGCTCTCTCAGCAGGCGGCGTGGGCTCCATCGTCCGTGTGCTAACGGCCCGGAAAACCGTTTAAAACCCACTTCACCCAAAACACCTTGGCAGCGCTGACACAGGGATTGGCTGGCACAACCCCAGGCAGCGCCTGGCACCTACCTACACTGTGGAGGACGTCCGGTCTCACatctctcgctttctttcttctcttttattgCATTGCTTTCGTTCTGGGTTTTTCTCGCAGAGACGACAGACAGCTGCAGTTCAGATCTCTGTATCAGCTCGAGGGTCCGAACGCAGTGGTCTTCATCAGTGGACAGATGTCCCTCTTTAAAACCGACACAACCTGCTCCACCTCTTTCACTCTGCTTACCACTCAGTGGACTGTTGAGGTGGATTTAGACGCTTCTGttgatatgatgatgatgatgacgatcatgatttttattataatatagtattgTAGGCATGAGTatggacctttttttttttgtttttaaacagtgtcacAGTGTACAGGGACACATCGTGCACTTTTTACATCCCTAAAATTACTTATTTGATGCAGTTTATTGGCGGGTATTGGGTCACtttatagtgtttattaaaCCTGCAAGGCCACAGCACTTTACTGTTAGCTCAGTAGAGGTACCATTAAATGATACAGTGATGCAGCataatatatatagaatatatcaGTGTTTTCCAAGTTTTTCACACTTTCGTACCTCCCGCTTGATTTTAAAGATGTACTCACAGTAGGCAATACGTGCCCTGGCCTGCTTGAAGAGGTGGACCAGAGCATGGTTCACTTGTACTCGAGCTTGTACTCGAGCTTGAGCGCCAACAAGATGATGTCAGTGATGCGACTTTCCTGTAAACAATCATGGAGGTgatgtgccgaattcagcatccccaccagaaaaagcaccccctcttgggAGCGACGCCATTTCGCTATGTACGtaaccatgacttttggcacatacTTCTAAGTAAGTTAAAACAGATCATCTTTGCTTTTGCGctcctgagagagggtgcttttcatggtgggggtgctgaataTGGCACAATACCAGCAAGCCCACTGAGCAGCGAGTGACGATGTAAgtgtgctcgggcacggattgtttaaacgcagtgtaGGTGCATGCCAgcgggggagtggggagggggcagaACTGTGTCTActgtgagtacaccctaaaaCTTTGCTTAGTATGCCTTATATGCTGCCATAAAAAACAGCTTACTCTGCAAGCTCTCAAAAGGTGGttcctgtggtatctggcaccaGCATGGTAAAACATCTCCTTAATttgaggtaaaatgaggtaaACACCCTGTCTCCAGTTCAGGGTGTCTCTTCTTGGACCAGTATGAGTAGGTACTTTCTGGTTTGGCAGATTTCTGAAGGTGGTATCTGTGGTACCTCTGACCAAGACATTACAGGAGATAATGCAAGTCCTTGAGTTCTAATTTGAGAGGTGGCCATTTGTGCCTCACATATAACATTCCTGAAGGTGGTCTCTGGGACCAAGATATTACAGGAGGTCCATTAAGGACCTTAAAGACCACTATCAATAGGTACTTTACTGGTTTGGCCCTTATCAATTGACAGTTGCCTCACCATCTGGAACCAAGATACCACAGCAGATCCATTACTTTTATTTGAGAGGTTGAAACACTCACCAGTTCCGGTGTTCCTCATTGGACCACTATCTGGTAGATATCTATCCACATAAAgcttcttaaatatatattttagggcAGATTATGTTGACAGTTGACAGACCTTACATACGGCATGTTGGCACAAGGGAGGAGCTCAGTTCTGCAGTGTTGTGGCCCTGCAGGTTCCAATACCAGCttttatatctaaaaaaaaaaaaaaaacaatgaatagaAGCACATCTCTCATCTTGTTGATGTTCATACTGCATTCCAGATCTTAAATCACAGGCACTGCACTcgctgtgtgtgtagtgttttttttctgccttagCACCACCTTCTGTTGGACAGTGTGCATCTTCTGAACGCAGAGGAAGGATACCTCGTCTTCTGCCACactttctgtacttgctgtctTGGCTGGGCTTTGCTGATTTCTTCTtattcttcctcctcctccttttcttcAGGCCAAGGTTTTGCTCAACTGCTGCCAGAAAAAAAGCAGCTACCTGACTTTCTACTTACACTcaagtggccactttattagaaacacctaccctgtaGTTCCACACTGGCCAGTTTGAGTTTGACCAGTGATGCaccgaatatttggcaactataaataataatttataaataatttctaACAAACAATGGCTTTCTTCTTTgtattttaagtcatattgcATTATTATCTGTAAGATTTCCTTCAGCAGGAGGCACTGGATACTGGATTCTGAGACACAACGCTACACTTAAAGCTAGGCTCCCTATAGTCACAGGGCTGTGTGAAACTAAGCTCACACAACAACTACAGTTTGTCATCAACAcagcgagtaatccagctcagaaaaaaaaaaaaacagttagcgTCACTCTCTAGCTCAGGAGAGTTTAGTTGTTGTGTCTGTTTGCAACAATTAGCAACAGTTCCAGCAGTGGGCCCCCACAgtgaaatatatgtatatagtagAAATGCTGTATTATGTTTTGCCGAGTCGACAAGCTGTCCAccgcactatgtaactttggtaaaGCAAGCGGCAGGACAAAGCTTGTGAATGTGGATTATTATTGCACCACATTCTTTTAATTCAGATGtcagttctgtatctctcagcttgtccagaaatgcacgtgtaaagcatgtccttcTGTTTGCTAAAATGTTcaaattgattatttttaaattgtagaaCTACGTTTCAGTTTTGGCTCTGTGGTCAAAAACTGTGTTACAGACAGACTTAAAGAAAAAGATCATTAAATGTTAATGAGTCTCTATCTGAGGAGACTCTATGCAATGTGGAGCTACAAGAGAggatttccaataaagtggccagtgagtgtctGGTACATGCTTTTATAGGACTAATCGCAAGTTCTTCAAgacagaaaaaagggaaagcattccttgtgtttgtttgctgccaaaaagtttgattctAATCTAAAGGAACtcaattttgtactttttttttttgttgttgttgttgtaatgATCTAGCATCTTTACAGTCACACAAAAACCTGCTATCTCCATCTTGCTGTCTTTCCTTGTTTGttgacttaaaggagaactccgatTGACTAGGGAAGTAAAACACGATAAATAGtattaacctttgttgaatagcacacctccattctcccgcagctttcccgagatccagtaattttgttctgtttgtccaaacatgctttagaatgaatgacatggggcatattttgcgcctgcagataaatcactttttccaccattatccaggctcagagtagctccacacctcattgctAGAATCCgtagagccctgacatttaaaaactttaaaagtgcacaagaagcttattaaaatccACTGTTTACATACCGTAGCGTGACCTAATGCCCGGGGCTGTAGCCAATGCgatgggttgtaaacagtgattttttaataagcttcttgtgcacttattaagttattaatgcctcattttaaatgtcagggctcttcagatactggatcttggaaagctgccGGCTATTCAAcaactctttatcatgttttactacaccaaaagtcaattttacaccggagttctcctttaatgcccAACATAAAACCAATTGtcacataatgttgctttaatgaTTAACATTTTTTGGAGATAGAAGGTTTTGTTGTGACTGTGATGATAAAACACTTCATCAGAATGAACCCAGGAATCAGGATGTTTGATCATCAGTTAAGGGCACTGAATATTTGTACTAAACGTTGATCACAAGCTCCTGTATACTGGATATCTTCATTAGGGATGTTCCGATCCGAGTCACTGAATGTAGAATATCATAGACACTGATCtttgtttgtataaataatacagacccagagaataaatattttgataaaacATGCTGGCtgttttactgaaataaaatccGTTCTAAGCTTACTAAAATTGCCCTTGATCGGATCGGGACATCCCTCATCTTCATCACTGATGAGGTCATTGTTCTGTAACAGGATTGGTATGTCCACTTGTTCACTTGTTTTGGATCCAGGTGATCATTACTGGGCCCTTTTTTTTGCATAGTAGATTTTAGACACCTACTGAAAGAGGTTTCTCACAGTCAGAGTGGGCCGAACATTCCTGACATGAGTATGTACTTCAGTCAGAGCTCAGCTCAGCCTCCCGCTGGTCCACTCTACAAGCCATACATGAAAAAACTAACTGCTTTGGGCAAAGCTGAGCGATCGTCAGTGTTTGAGAGGGTGTGGTAAATGGGTGCATATCACTCACTTGATCAAGTGCAAATATAACAAACAAGTTTACCAACTGCCTTATAAAATATTCCTTTTATAACGTGTGGTCCATTTGGaagcaataaaaatgtattatgattgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
>XM_007245060.3
AGGAAGCGGATTGCGGAAGCGGCCAGAGGAAGAGCAGTGAGGAGTCCTGCAGGCCTTCAGCGCTCAGATTTCAGTGCTTTAAATCAGTTTATAATCGGAGTATTTATCTTCTAGTGTAATCATGTCTAAGAACACGGTGTCGGACCGCTTCAGGAAGGTGGATGTGGATGAGTATGATGAGAATAAGTTTGTGGATGAGGAAGACGGCGGGGAGAACCAGCTGGGTCCGGATGAGGCGGAGGTGGACTCGCTAATCAGGCAATCAAACCTGATGGGGGCGCTGCAGGCTGTACTGAAAAACCCACCAATCAACACAAAGAACCAGAATGTGAAGgatCGGGCCGAGGGTCTGGTATTGAAAGTGCTGACGGCCTTTAAGAGCAGTGATATTGAGAAGGCGGTTCAGTCTCTGGATAAGAACAAAGTGGACCTCCTGATGAAGTACATCTACAAAGGCTTTGAACGGCCCTCAGAGAACAGCAGCGCAGTCCTGCTGCAGTGGCACGAAAAGGCTCTCTCAGCAGGCGGCGTGGGCTCCATCGTCCGTGTGCTAACGGCCCGGAAAACCGTTTAAAACCCACTTCACCCAAAACACCTTGGCAGCGCTGACACAGGGATTGGCTGGCACAACCCCAGGCAGCGCCTGGCACCTACCTACACTGTGGAGGACGTCCGGTCTCACatctctcgctttctttcttctcttttattgCATTGCTTTCGTTCTGGGTTTTTCTCGCAGAGACGACAGACAGCTGCAGTTCAGATCTCTGTATCAGCTCGAGGGTCCGAACGCAGTGGTCTTCATCAGTGGACAGATGTCCCTCTTTAAAACCGACACAACCTGCTCCACCTCTTTCACTCTGCTTACCACTCAGTGGACTGTTGAGGTGGATTTAGACGCTTCTGttgatatgatgatgatgatgacgatcatgatttttattataatatagtattgTAGGCATGAGTatggacctttttttttttgtttttaaacagtgtcacAGTGTACAGGGACACATCGTGCACTTTTTACATCCCTAAAATTACTTATTTGATGCAGTTTATTGGCGGGTATTGGGTCACtttatagtgtttattaaaCCTGCAAGGCCACAGCACTTTACTGTTAGCTCAGTAGAGGTACCATTAAATGATACAGTGATGCAGCataatatatatagaatatatcaGTGTTTTCCAAGTTTTTCACACTTTCGTACCTCCCGCTTGATTTTAAAGATGTACTCACAGTAGGCAATACGTGCCCTGGCCTGCTTGAAGAGGTGGACCAGAGCATGGTTCACTTGTACTCGAGCTTGTACTCGAGCTTGAGCGCCAACAAGATGATGTCAGTGATGCGACTTTCCTGTAAACAATCATGGAGGTgatgtgccgaattcagcatccccaccagaaaaagcaccccctcttgggAGCGACGCCATTTCGCTATGTACGtaaccatgacttttggcacatacTTCTAAGTAAGTTAAAACAGATCATCTTTGCTTTTGCGctcctgagagagggtgcttttcatggtgggggtgctgaataTGGCACAATACCAGCAAGCCCACTGAGCAGCGAGTGACGATGTAAgtgtgctcgggcacggattgtttaaacgcagtgtaGGTGCATGCCAgcgggggagtggggagggggcagaACTGTGTCTActgtgagtacaccctaaaaCTTTGCTTAGTATGCCTTATATGCTGCCATAAAAAACAGCTTACTCTGCAAGCTCTCAAAAGGTGGttcctgtggtatctggcaccaGCATGGTAAAACATCTCCTTAATttgaggtaaaatgaggtaaACACCCTGTCTCCAGTTCAGGGTGTCTCTTCTTGGACCAGTATGAGTAGGTACTTTCTGGTTTGGCAGATTTCTGAAGGTGGTATCTGTGGTACCTCTGACCAAGACATTACAGGAGATAATGCAAGTCCTTGAGTTCTAATTTGAGAGGTGGCCATTTGTGCCTCACATATAACATTCCTGAAGGTGGTCTCTGGGACCAAGATATTACAGGAGGTCCATTAAGGACCTTAAAGACCACTATCAATAGGTACTTTACTGGTTTGGCCCTTATCAATTGACAGTTGCCTCACCATCTGGAACCAAGATACCACAGCAGATCCATTACTTTTATTTGAGAGGTTGAAACACTCACCAGTTCCGGTGTTCCTCATTGGACCACTATCTGGTAGATATCTATCCACATAAAgcttcttaaatatatattttagggcAGATTATGTTGACAGTTGACAGACCTTACATACGGCATGTTGGCACAAGGGAGGAGCTCAGTTCTGCAGTGTTGTGGCCCTGCAGGTTCCAATACCAGCttttatatctaaaaaaaaaaaaaaaacaatgaatagaAGCACATCTCTCATCTTGTTGATGTTCATACTGCATTCCAGATCTTAAATCACAGGCACTGCACTcgctgtgtgtgtagtgttttttttctgccttagCACCACCTTCTGTTGGACAGTGTGCATCTTCTGAACGCAGAGGAAGGATACCTCGTCTTCTGCCACactttctgtacttgctgtctTGGCTGGGCTTTGCTGATTTCTTCTtattcttcctcctcctccttttcttcAGGCCAAGGTTTTGCTCAACTGCTGCCAGAAAAAAAGCAGCTACCTGACTTTCTACTTACACTcaagtggccactttattagaaacacctaccctgtaGTTCCACACTGGCCAGTTTGAGTTTGACCAGTGATGCaccgaatatttggcaactataaataataatttataaataatttctaACAAACAATGGCTTTCTTCTTTgtattttaagtcatattgcATTATTATCTGTAAGATTTCCTTCAGCAGGAGGCACTGGATACTGGATTCTGAGACACAACGCTACACTTAAAGCTAGGCTCCCTATAGTCACAGGGCTGTGTGAAACTAAGCTCACACAACAACTACAGTTTGTCATCAACAcagcgagtaatccagctcagaaaaaaaaaaaaa

Function

symbol description
arpc5b Predicted to enable actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation and cell migration. Predicted to act upstream of or within regulation of actin filament polymerization. Predicted to be located in actin cytoskeleton. Predicted to be part of Arp2/3 protein complex. Predicted to be active in cytoplasm. Orthologous to human ARPC5 (actin related protein 2/3 complex subunit 5).
arpc5 A structural constituent of cytoskeleton. Contributes to actin filament binding activity. Involved in Arp2/3 complex-mediated actin nucleation and cell migration. Located in extracellular exosome and focal adhesion. Part of Arp2/3 protein complex. Biomarker of lung non-small cell carcinoma and lung squamous cell carcinoma.

NR:

description
actin-related protein 2/3 complex subunit 5-like

GO:

id name namespace
GO:0030833 regulation of actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1203 True 4880 TUCP 0.53 4 2910754 2968477
XM_007245060.3 False 3041 mRNA 0.45 4 2963576 2970340

Neighbor

gene id symbol gene type direction distance location
fam129a NA coding downstream 18398 2835312 ~ 2892356 (-)
LOC103035527 prrx1,prrx1a,LOC108444493,LOC107693734,LOC107722649 coding downstream 192719 2700358 ~ 2718035 (-)
LOC111193163 NA coding downstream 368413 2539816 ~ 2542341 (-)
LOC103037050 LOC108432507 coding downstream 488113 2405363 ~ 2422641 (-)
LOC103036044 LOC108432506 coding downstream 515389 2376247 ~ 2395365 (-)
LOC103034573 pla2g4a,LOC107718137,LOC107677770,LOC107693742,LOC107722605,LOC107589895,LOC107594671 coding upstream 15993 2986333 ~ 3036834 (-)
c1h1orf27 cunh1orf27,LOC103031066 coding upstream 129506 3099846 ~ 3114769 (-)
LOC111193343 prg4 coding upstream 193371 3163711 ~ 3179594 (-)
LOC103033918 LOC108431152,LOC106599103,LOC106568909,LOC108278312 coding upstream 218667 3189007 ~ 3217021 (-)
olfml2b olfml2b,LOC107718167 coding upstream 327473 3297813 ~ 3316021 (-)
G881 mblac1 non-coding downstream 76910 2832123 ~ 2833844 (-)
G854 NA non-coding downstream 130872 2779649 ~ 2779882 (-)
G850 NA non-coding downstream 162474 2748048 ~ 2748280 (-)
G825 NA non-coding downstream 260767 2616083 ~ 2649987 (-)
G838 NA non-coding downstream 261741 2645262 ~ 2649013 (-)
G952 NA non-coding upstream 25490 2995830 ~ 3000663 (-)
G958 NA non-coding upstream 79068 3049408 ~ 3049755 (-)
G963 NA non-coding upstream 90603 3060943 ~ 3061199 (-)
G977 pdc,pdca,LOC108277616,LOC107693745,LOC107594646 non-coding upstream 122605 3092945 ~ 3149212 (-)
G990 NA non-coding upstream 217163 3187503 ~ 3187982 (-)
G807 NA other downstream 310243 2550216 ~ 2600511 (-)
znf414 NA other downstream 476353 2423713 ~ 2434401 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other downstream 982499 1920480 ~ 1928255 (-)
yipf1 yipf1 other downstream 1037627 1864515 ~ 1873127 (-)
LOC111197534 NA other downstream 2054594 855579 ~ 856160 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other upstream 423864 3394204 ~ 3445386 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other upstream 912030 3882370 ~ 3909671 (-)
G1308 NA other upstream 1129425 4099765 ~ 4101566 (-)
LOC111193794 LOC108442858 other upstream 1296661 4267001 ~ 4271970 (-)
LOC111193783 LOC108442858 other upstream 1306569 4276909 ~ 4321340 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015376 arpc5a coding NC_007113.7 CM002886.2 20967673 ~ 20975677 (+)
tiger barb (Puntius tetrazona) arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 misc NC_056700.1 CM032069.1 9746570 ~ 9751212 (+)