G958


Basic Information

Item Value
gene id G958
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 3049408 ~ 3049755 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU1298
caacaccagcagatgacatgtctctccaaaccatcactgattggtggaaacttcacactagacctcaagcagtttggactgtgtgtctctccactcttcctccagactctgatcccttgattttcacatgaaatgtaaaatttactgatgatcagtgatggtttggagagacatgtcatctgctggtgttgatccactgtgttttattatcaagtctaaagtcagtgcagtttagttttcccacaaaatcttacagcacttcatgcttccctctgctactgacaacttttatggagatgcggatttcattttccagcaggacttggcacactgcccacactgccaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1298 True 348 lncRNA 0.44 1 3049408 3049755

Neighbor

gene id symbol gene type direction distance location
LOC103034573 pla2g4a,LOC107718137,LOC107677770,LOC107693742,LOC107722605,LOC107589895,LOC107594671 coding downstream 12574 2986333 ~ 3036834 (-)
LOC103032964 LOC108444491,LOC107722586,LOC107718136,LOC107693739,LOC107589867 coding downstream 121342 2916789 ~ 2928066 (-)
fam129a NA coding downstream 157052 2835312 ~ 2892356 (-)
LOC103035527 prrx1,prrx1a,LOC108444493,LOC107693734,LOC107722649 coding downstream 331373 2700358 ~ 2718035 (-)
LOC111193163 NA coding downstream 507067 2539816 ~ 2542341 (-)
c1h1orf27 cunh1orf27,LOC103031066 coding upstream 50091 3099846 ~ 3114769 (-)
LOC111193343 prg4 coding upstream 113956 3163711 ~ 3179594 (-)
LOC103033918 LOC108431152,LOC106599103,LOC106568909,LOC108278312 coding upstream 139252 3189007 ~ 3217021 (-)
olfml2b olfml2b,LOC107718167 coding upstream 248058 3297813 ~ 3316021 (-)
LOC103033290 NA coding upstream 326855 3376610 ~ 3383122 (-)
G952 NA non-coding downstream 48745 2995830 ~ 3000663 (-)
G881 mblac1 non-coding downstream 215564 2832123 ~ 2833844 (-)
G854 NA non-coding downstream 269526 2779649 ~ 2779882 (-)
G850 NA non-coding downstream 301128 2748048 ~ 2748280 (-)
G825 NA non-coding downstream 399421 2616083 ~ 2649987 (-)
G963 NA non-coding upstream 11188 3060943 ~ 3061199 (-)
G977 pdc,pdca,LOC108277616,LOC107693745,LOC107594646 non-coding upstream 43190 3092945 ~ 3149212 (-)
G990 NA non-coding upstream 137748 3187503 ~ 3187982 (-)
G1016 NA non-coding upstream 239750 3289505 ~ 3289918 (-)
G1017 NA non-coding upstream 244821 3294576 ~ 3294782 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other downstream 79068 2910754 ~ 2970340 (-)
G807 NA other downstream 448897 2550216 ~ 2600511 (-)
znf414 NA other downstream 615007 2423713 ~ 2434401 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other downstream 1121153 1920480 ~ 1928255 (-)
yipf1 yipf1 other downstream 1176281 1864515 ~ 1873127 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other upstream 344449 3394204 ~ 3445386 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other upstream 832615 3882370 ~ 3909671 (-)
G1308 NA other upstream 1050010 4099765 ~ 4101566 (-)
LOC111193794 LOC108442858 other upstream 1217246 4267001 ~ 4271970 (-)
LOC111193783 LOC108442858 other upstream 1227154 4276909 ~ 4321340 (-)

Expression


Co-expression Network