LOC111193163


Basic Information

Item Value
gene id LOC111193163
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 2539816 ~ 2542341 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672560.1
TATTCAAATCAGAGGGTGTGTCTACTATTATTCTAGCAGCACATCAGCGCCTTTTCTCCGTTTTGAGATGTATTTCGCACGAGAGGAGAAGtttatttttcctaaaattgCACCCTGGGTTCACGACCTTCCACTAATGAGGCGCAAGACTAGAGGTGAGCCGTGGTATCTCCACGTGCCCCTCCCACCACCAGCAAAACCTGCTGCCAGAAACACCGGCAGCAGGTTTCCCCCAATCAAAGGGCTGGAACAAGAATGGAGCGGGGTCTTAGGGGACTCCTCCTTTGGAGAGTTCACCTCAAGGCCCCTCCATTACCATCCAACTCCTCCACCAACTCCTCCGCCTGTCACTGCTACCCAGCCAGTGGTGGTGAATAAGCCCCCGGCCTACAATTCACCAGGTAGCAGAATACCTATTCTGGACAGGCGGAGGAAGCTGAGGCCAGTCCAAGCTGTGGTGCAGCCCATTAACAATATGGCTGCCCACAGCATAATAACGGACAAACCAGCTCAGGTGGAGAGAGCAGTCAGGAAGAAGCCCAGTAAGATCAGGGCAGCTCCTCAGGCCGTTGGGAAAGGTCAGGGACTGGAGCAGCCACTGGTGCCACCATCCCTGACCAGTGAAAATCCCATCAACAGGCCTGAGGACGCTCTCGGCCAGGCACTAGGTCTGCTGCAGGATGAGGAATGGGAAAGGAAGATTGAGGGACTGAGGCTTGTGCGAGCTCTGGCTGAACATCACTCTGAGGTGGTGCTGCCAGAGCTCCACTACGTCTGCAAAGCAGTCATTGCGGAGGTGAAAAACCTCCGCTCTATTGTCTCTCGGGACGCCATCACCACAATGGCGCACCTTTTCACTCACCTGCAGCACAACATGGACAGTGAGGTCGAGGGCGCTGCTCACACCCTCCTTCATAAGGCTGGGGAAACCAGTCTTTTTATAAGGCAGGGTGTGGAGCTAGCCCTCAGCACTATGGTGCACCACTGTTCGCCTGGCCGAGTCCTGCGAGGACTGCTGGATGGTGGATTcagACACAGAAACCGGGTCTCCAGGGCCGCCACTGCATTGAGCCTGGTGAGGCTCCTGCAGGTGGTTGGAGTTTCTCGTGTGCTGACTGGCAGGAAGAATTTAGCGAGTGAATTCGTTCCTGCCGTCAGCACACTGGCGTTTGATGCAGACCAGGACGTCCGGGCCCATGCTCGTGCTGCACTGCGGTACCTGGGCAGCCACAAGGACGCAGAAAGGGCTGTAGAGAAATATGTCCAATTAAGGGACCAATCACAAGTGAAGAAGTTGCTTcacaattaattaatgaataattgtttaatttattgtctgtagttgagatgttgttcagtgttcagctGTTCAGACTGGGTTTGGTGTTGAATGCTCTGTTCTAGAGAAGTTTACAGACTCAGAGCTGTTCACAGTGGTGGAGAACAGGAACTACATCTGAAGAGGTGGATGAGGCAGCGGCTCCACCTTCCTCTCGCCAGAGGGAGGCGGGGTCTCTGCTTGGTGGGAAACGTGCCGGCCCCGTGGCATCAGGGCTTCCCAGTCAACCAGCTGGGAATCTCCCGCCCCCAAACAAGCCCTGCAAAGCTTGTGAGGGGTTCGCCCAGGGCCGGCCGGCGTCCCCCAGTCCACCCTTCAGACGTACAGGTCCCGTCTCCATCACTGTGATCAGCTCTGACTCTGTCGGCTTCTCTGGAACAaagcatttcacaccaaacccacTCTGAACACCTGAACACCGAATAACATCTCAACCACACTGACCAAATTTAATTTCACATAAATTTATGTAACATTAAGTAACTtcattaatttacttaaatttatctttttttttttcattgcaaaataaaaatccttaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672560.1 True 1881 mRNA 0.52 6 2539816 2542341

Neighbor

gene id symbol gene type direction distance location
LOC103037050 LOC108432507 coding downstream 117175 2405363 ~ 2422641 (-)
LOC103036044 LOC108432506 coding downstream 144451 2376247 ~ 2395365 (-)
LOC103037376 NA coding downstream 166861 2324606 ~ 2372955 (-)
LOC103036651 LOC103036651,LOC108432502,LOC105899541,LOC105028795,LOC108278136,LOC107718120 coding downstream 427657 2103470 ~ 2112159 (-)
thap4 thap4 coding downstream 466173 2067978 ~ 2073643 (-)
LOC103035527 prrx1,prrx1a,LOC108444493,LOC107693734,LOC107722649 coding upstream 158017 2700358 ~ 2718035 (-)
fam129a NA coding upstream 292971 2835312 ~ 2892356 (-)
LOC103032964 LOC108444491,LOC107722586,LOC107718136,LOC107693739,LOC107589867 coding upstream 374448 2916789 ~ 2928066 (-)
LOC103034573 pla2g4a,LOC107718137,LOC107677770,LOC107693742,LOC107722605,LOC107589895,LOC107594671 coding upstream 443992 2986333 ~ 3036834 (-)
c1h1orf27 cunh1orf27,LOC103031066 coding upstream 557505 3099846 ~ 3114769 (-)
G806 LOC108432510 non-coding downstream 13620 2523317 ~ 2526196 (-)
G782 LOC108432509 non-coding downstream 45973 2491615 ~ 2493843 (-)
G780 NA non-coding downstream 52651 2481385 ~ 2487165 (-)
G748 NA non-coding downstream 136499 2400655 ~ 2403317 (-)
G750 NA non-coding downstream 139390 2398073 ~ 2400426 (-)
G810 csnk1g2 non-coding upstream 56505 2598846 ~ 2601377 (-)
G822 NA non-coding upstream 64764 2607105 ~ 2607722 (-)
G824 NA non-coding upstream 71000 2613341 ~ 2613813 (-)
G825 NA non-coding upstream 73742 2616083 ~ 2649987 (-)
G838 NA non-coding upstream 102921 2645262 ~ 2649013 (-)
znf414 NA other downstream 105415 2423713 ~ 2434401 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other downstream 611561 1920480 ~ 1928255 (-)
yipf1 yipf1 other downstream 666689 1864515 ~ 1873127 (-)
LOC111197534 NA other downstream 1683656 855579 ~ 856160 (-)
LOC103037308 LOC108440474,LOC108278112,LOC107585786,LOC107669856,LOC107745208 other downstream 1869101 589669 ~ 670715 (-)
G807 NA other upstream 7875 2550216 ~ 2600511 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other upstream 368413 2910754 ~ 2970340 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other upstream 851863 3394204 ~ 3445386 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other upstream 1340029 3882370 ~ 3909671 (-)
G1308 NA other upstream 1557424 4099765 ~ 4101566 (-)

Expression


Co-expression Network