LOC103037050 (LOC108432507)


Basic Information

Item Value
gene id LOC103037050
gene name LOC108432507
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 2405363 ~ 2422641 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672317.1
GGGCTGAGCGGAGCCCCGGTGAGGATGCAGCTCCgcgctccagcagcagcagcagcagcagctcctcaGTAAATAAAGCGGAGAGCCGGGGAGCAGCAGCATGGAGAACATGTGCACGGTGCAGGTGAAGCTGGAGCTCGGCCACAGAGCCCAACTCCGGAAGAAAGCCACCACTGAGGGCTTCACTCACGACTGGATGGTGTTTGTTCGAGGCCCGGAGACGTGCGACATCCAGCACTTTGTGGAGAGGGTGGTGTTCAGACTGCACGAAAGCTTCCCCAAACCCAAACGAGtgtgtaaaGAGCCTCCGTATAAGGTGGAAGAGTCTGGATATGCTGGATTCCTTATGCCCATAGAGGTCTACTTTAAAAACAAgGAGGAGCCTAAGAAAGTTTGCTTTAATTATGACCTCTTCCTGAACCTGGAAGGCAACCCCCCGGTCAATCACCTGCGCTGCGAGAAGCTCACGTTTAACAACCCCACGCACGAGTTCCGCCGCAAACTGGTGAAAGCTGGAGGGGTGATGGTCGTCCCGGAGGGAGCGGAGATGATGCCGAGACCCAGTCCAGATTACCCCATGCTGCCCACCATCCCACTGTCTGCCTTCTCAGACCCTAAAAAGATCAAATCGTCTCATGGGATAAAGGAGCCAAGCAAAGATGGAGCAGGAGGAAGCAGTAAAGTCCCTAAACCACATAAGGCAACCAAAGAGCACAAAGAGCGAACAAGAAAAGACTCTGAGAGTAAAGCCTCATCCAGAGAGAGCGACCGCGACGGAGGAAAACCCGCTCGAGAACCGctgtcctcctcctcatcctcctcctcctccaggaAAACTACAGAGAACCGCGGGAAGGAGGAGAGCAGACCTGTTCCCAAAGCTGCTTTTAAAGAGCCCAAACTCACCCTGAGAGAACCCAAAactgagggaggaggaggaggaacaaCCACAACAACAGCATCAGgaggaggaggaggtggtggaggaggaggaggaggtggaggaggtggtggaggaggaacAAATAAACGCCAGTCAACCACGACAGAGTCGCCCAAACTCAGCACCAAGAAACAGAAGAGTATGAAAGGATCTGCTGGTGGAGGACTGAGCAGCAGCTCCCCCCGTATCTCCTCCTCTACCCCCTCCACCTTCCCTGAGAAGAAAGCATCCAAAGAGAAGAGTCACTGGGCCAAGCTGAggccagagctgcaggaggtgAAGAGACAGCCCGAGTCCGACGAGTCCAACTCAGAGGACGAGGCCTCGTCCAAATCTGAGCCGTCTGCCCAGTCCAGcccctccagctccagctccacctCCAGCTCTGACTCTGACTTTGAGCCGTCTCAGAAGCAAGGCCAGGGACCTTTACGCTCCATGGTGGAGGATATGCGCTCTGAAGGCTCTGACGACGACAGCAGCTCAGAGGTGGAAACGCCCATGAAGAACACTCCACCCAACCAGGACTCACGTGCCATATTCAGTATGAGTTTGGACAGTGAGAGTGATGGAGTGGAGGAACCTCGTCCCCCCAGCCAGGAGCCCCCCTCTCCTCCCCACAAACTCAGCACAGCCAACCACAAGatgttggGGAAGAAGAGCCCAGATTTGTGCTCTAGAGATAAGATGATTAAGAGGGGACTCGACAAGGTAGGAAgggctTATACAGAGGAGCTGGTGGATCTCCATCGCAGACTGATGGCTCTGAGAGAGAGGAATATTTTACAGCAGATAGTAAACCTAATCGAAAAGACCGGTCATTTCAACGTCACCAACACCACCTTCGACTTTGACCTTTTCTCGCTGGACGAATCGACTGTGCGGAAACTTCAGAGCTACCTGGAGGCGACGTCCACATGACACAGGGGAGCTTTAGGTCCACCGCTCCCCTCACACTGCGATTAAACCCCCCCTGATCAGACGGGGGGTGCAGACGGACAGGTACTGAATCAGCGTGTAAATGCACCGGGAGCGAGAACAACAGAAGATATACAGTAATACTGTAACACGTCATGAACACGAGCGCTGGGGTGGTCAGGGTTCATCCGATGAAGGCAACACTTCGTTTTTTGCACTAAACCATGAGATTCAAACTGTCGGCACAATACTGTCCAAAGCGGACCAGAGTTTCGCTGTAGGCATTGCAGCTGTATATCAGTTATTGATacttatttacaataaatacagagaCCCGTTTGTGCCAGAGCCGTAACACTGATGGCGTAGCTATATCTCGCTTGTGTCTCTAAGGGCTGTGTGCAAACATTTCTCAAACAACTGAACTGCATCTGTAGCTGCTCTCATATCTCTCTGCTGCTTGTAGCTCAGAAACTCCTGCTCAGTACGATAAAGTGGAAAGACAGGACCAGGAGCAAAGCTTTAAAGGACTATTGAAGCTAAAAATGCTAATATAAACCAGGTATAATAGCCTGCATAGCCGCTGTTTAGCTTTTAGGGATGGGCATGGCTATTCATAAATACAGTACCAAtaacagaatacagaatttaattcattcattcattcattcatttatttatgtatcagTTAGGAAAAATAAGGCTAGTATTTAATCAGATAAGATAAATATAGGGAAAAATCTATAAAcctattaaaaaatgtaagtcacatttaagcaacactagtaaagaTGCCTACATCGGAGTGAGCAAGGGTgccgccatgtttcccttttaatggAGAAGCTGtgggaagcgcctaagtaaacaaaaatttaattccaaaaaaaaaaaaa

Function

NR:

description
PREDICTED: protein ENL-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K15187 MLLT1_3, ENL, AF9; YEATS domain-containing protein 1/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672317.1 True 2757 mRNA 0.50 14 2405363 2422641

Neighbor

gene id symbol gene type direction distance location
LOC103036044 LOC108432506 coding downstream 9998 2376247 ~ 2395365 (-)
LOC103037376 NA coding downstream 32408 2324606 ~ 2372955 (-)
LOC103036651 LOC103036651,LOC108432502,LOC105899541,LOC105028795,LOC108278136,LOC107718120 coding downstream 293204 2103470 ~ 2112159 (-)
thap4 thap4 coding downstream 331720 2067978 ~ 2073643 (-)
LOC103039280 stk25b,LOC108432500,LOC107585675,LOC107722570,LOC108278137,LOC107693719,LOC107589848 coding downstream 353220 2038886 ~ 2052143 (-)
LOC111193163 NA coding upstream 117175 2539816 ~ 2542341 (-)
LOC103035527 prrx1,prrx1a,LOC108444493,LOC107693734,LOC107722649 coding upstream 277717 2700358 ~ 2718035 (-)
fam129a NA coding upstream 412671 2835312 ~ 2892356 (-)
LOC103032964 LOC108444491,LOC107722586,LOC107718136,LOC107693739,LOC107589867 coding upstream 494148 2916789 ~ 2928066 (-)
LOC103034573 pla2g4a,LOC107718137,LOC107677770,LOC107693742,LOC107722605,LOC107589895,LOC107594671 coding upstream 563692 2986333 ~ 3036834 (-)
G748 NA non-coding downstream 2046 2400655 ~ 2403317 (-)
G750 NA non-coding downstream 4937 2398073 ~ 2400426 (-)
G696 NA non-coding downstream 152784 2250881 ~ 2252579 (-)
G694 NA non-coding downstream 158557 2239442 ~ 2246806 (-)
G671 NA non-coding downstream 178802 2145428 ~ 2226561 (-)
G780 NA non-coding upstream 58744 2481385 ~ 2487165 (-)
G782 LOC108432509 non-coding upstream 68974 2491615 ~ 2493843 (-)
G806 LOC108432510 non-coding upstream 100676 2523317 ~ 2526196 (-)
G810 csnk1g2 non-coding upstream 176205 2598846 ~ 2601377 (-)
G822 NA non-coding upstream 184464 2607105 ~ 2607722 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other downstream 477108 1920480 ~ 1928255 (-)
yipf1 yipf1 other downstream 532236 1864515 ~ 1873127 (-)
LOC111197534 NA other downstream 1549203 855579 ~ 856160 (-)
LOC103037308 LOC108440474,LOC108278112,LOC107585786,LOC107669856,LOC107745208 other downstream 1734648 589669 ~ 670715 (-)
znf414 NA other upstream 1072 2423713 ~ 2434401 (-)
G807 NA other upstream 127575 2550216 ~ 2600511 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other upstream 488113 2910754 ~ 2970340 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other upstream 971563 3394204 ~ 3445386 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other upstream 1459729 3882370 ~ 3909671 (-)

Expression


Co-expression Network