LOC103035527 (prrx1,prrx1a,LOC108444493,LOC107693734,LOC107722649)


Basic Information

Item Value
gene id LOC103035527
gene name prrx1,prrx1a,LOC108444493,LOC107693734,LOC107722649
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 2700358 ~ 2718035 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672769.1
tcagtgCCAGACATTCGCAGTTGTTTGAAGTAGCAGGAGCAGCTCCATGCCcaggagagagggagtgagtaggcgagcgaaagagagagagagagaaagagagagagagagagcacatctgAGTGAGTGCAGTAAAGTCCAGGAGAGTTTGGAAGGAGGCGAATGGTTCCTGTGAGAAGATCAGCGCTGGCTTCATGGTGTTACTGACTCTCCAGAACCTGGAATCCAGAGCAGGTTTTCTGAATTTAACCCCAGAAACGTCTCCACAGGGGggtctctcagtctctcagcGGAACGGACCCTCAGCCCTGAGGTTTGGGATTCTGCAGCCTGAAGACGGAACTTTTCCAGCAGAAAAATCCAAGCTTCCATGGTTGGGATCTCCAACAGATCCATGTTTGTTGTAACTGAGGATCATTCGGACTCATCTTCACCCAACAAATTCATCCACCCTCTGCCCAGTCCTCTGCCCAGTCCTCTGCCCAGTTCCTTGCCCAGTCCGAGTCATGACTTCTAGCTATGCCCATGTAATGGACAGACCAGCCACGCTGCCCAACCACCGCCTGGAGAGCCCCATCACCGCCAGCCACCTGGACAATTTACAGGCTAAGAAGAACTTCTCGGTGAGCCACCTGCTGGACCTGGAGGACTCGAGGGAGATGGTGGGAGCGCAGGGGGATGAGGGGGCCGCCGAGACGGGCAGGAACATGCTGGAGTCGCCCGGACTGACCAGCGGCAGCGACACCGCACAGCAAGACAgtgagCAGCTGAACtcggaggagaagaagaagcgTAAGCAGCGCAGGAACCGGACCACGTTTAACAGCAGTCAGCTGCAGGCGCTGGAGCGAGTGTTCGAGAGGACGCACTACCCCGACGCCTTCGTCAGAGAGGACCTGGCCCGCAGGGTCAACCTCACCGAGGCCCGGGTACAGgTGTGGTTTCAGAACCGCCGGGCCAAGTTCCGGCGTAACGAGAGAGCCATGCTGGCCAGTAAAAACGCCTCGCTGCTCAAGTCCTACTCAGGAGACGTCACGTCGGTGGAACAGCCCATAGTGCCCCGGCCTGCCCCCCGACCCAGCGACTACCTGTCCTGGGGGGGCTCAGCTCCATACAGTGCGATGGCGAGCTACTCGCCGTCCTGCGCCAACAACAACACGGCCCAGGGCGTGAACATGGCCAACAGCATCGCCAACCTGAGACTGAAGGCCAAGGAGTACAGCCTGAACCAGGTGCCCACCGTCAACTGAGGGGACGCCGTTTACGGGGACGCTGTTTGGCGCTAAGAAAAACGTTGGGCGGACGATAAAAATAACGATAACGGTAATGATAGCGTTAACTGTTGAgccaaaaatgaaagaaagatcCTGCCAGTCTCCGTCTTCATACAGATGAATGATGTGTACTCACTACTCACTGTGTGCCTTACGTTGTGCATCATGGCCTTCTTTTGGACGTATCGGTATCAGAAGAGAAGAATAACGGGACTCATCCTGGATGTTAAAGCGAAACGAAGCGGGAGGAAAGCCCAGACACTCTAAAACATTGATTTACCTAAGATACGATATGTCATGTTTTGGGCAGTCGCTGAAGACATGTGGGGAAAGATTTTTTGGAGAACACAAAGTGAAGGGCCAAATGGAAAGTCTGTGTTTTCGAGTTCGCCAAAGCTACATGGGCGTCGCTCGGGCAGGTTCTGGAAACCGCAGCTGATCGCGGGGAAGCGATGACCTCTCTGGAATCCGgctgaagacttttttttttctttttgtttcggGGAGTCTTCAGGATTTTTCCTTGATTTCCCAAGAGACCCACAGCTCAGTATAATCACTGCCAAGACTTTGCTGTGTTTTTCAATAACTGGGTAaaacgttgtttttttttaagctctgtAATAAACGTATTATGATTTCACGTCGGGTTTCGATTGACACGCagtggattgattgattgaggATTCTGGTGTGCGTACGCCATCCTGTATCATTGGGAACTAAGCCATCTCTCTCTAAAGACTCTCTCTAAAGCCCAGAAGCCTTACCCTGTGTGTACTGTATACTGCCTGAGtatatctgaaaaaaatgtcattttactatgcaataaaaaaacatgcgaAAGCAGTGTAATGCAGAAA

Function

symbol description
prrx1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including atrial cardiac muscle cell action potential; epithelial to mesenchymal transition; and heart looping. Predicted to be active in nucleus. Is expressed in several structures, including cranial vault; fin; gill; mesenchyme; and mesoderm. Human ortholog(s) of this gene implicated in agnathia-otocephaly complex. Orthologous to human PRRX1 (paired related homeobox 1).
prrx1 Enables DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and RNA polymerase II-specific DNA-binding transcription factor binding activity. Involved in positive regulation of DNA repair by transcription from RNA polymerase II promoter. Located in cytosol and nucleoplasm. Implicated in agnathia-otocephaly complex.

NR:

description
PREDICTED: paired mesoderm homeobox protein 1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09329 PRRX, PMX; paired mesoderm homeobox protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672769.1 True 2137 mRNA 0.52 4 2700358 2718035

Neighbor

gene id symbol gene type direction distance location
LOC111193163 NA coding downstream 158017 2539816 ~ 2542341 (-)
LOC103037050 LOC108432507 coding downstream 277717 2405363 ~ 2422641 (-)
LOC103036044 LOC108432506 coding downstream 304993 2376247 ~ 2395365 (-)
LOC103037376 NA coding downstream 327403 2324606 ~ 2372955 (-)
LOC103036651 LOC103036651,LOC108432502,LOC105899541,LOC105028795,LOC108278136,LOC107718120 coding downstream 588199 2103470 ~ 2112159 (-)
fam129a NA coding upstream 117277 2835312 ~ 2892356 (-)
LOC103032964 LOC108444491,LOC107722586,LOC107718136,LOC107693739,LOC107589867 coding upstream 198754 2916789 ~ 2928066 (-)
LOC103034573 pla2g4a,LOC107718137,LOC107677770,LOC107693742,LOC107722605,LOC107589895,LOC107594671 coding upstream 268298 2986333 ~ 3036834 (-)
c1h1orf27 cunh1orf27,LOC103031066 coding upstream 381811 3099846 ~ 3114769 (-)
LOC111193343 prg4 coding upstream 445676 3163711 ~ 3179594 (-)
G825 NA non-coding downstream 50371 2616083 ~ 2649987 (-)
G838 NA non-coding downstream 51345 2645262 ~ 2649013 (-)
G824 NA non-coding downstream 86545 2613341 ~ 2613813 (-)
G822 NA non-coding downstream 92636 2607105 ~ 2607722 (-)
G810 csnk1g2 non-coding downstream 98981 2598846 ~ 2601377 (-)
G850 NA non-coding upstream 30013 2748048 ~ 2748280 (-)
G854 NA non-coding upstream 61614 2779649 ~ 2779882 (-)
G881 mblac1 non-coding upstream 114088 2832123 ~ 2833844 (-)
G952 NA non-coding upstream 277795 2995830 ~ 3000663 (-)
G958 NA non-coding upstream 331373 3049408 ~ 3049755 (-)
G807 NA other downstream 99847 2550216 ~ 2600511 (-)
znf414 NA other downstream 265957 2423713 ~ 2434401 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other downstream 772103 1920480 ~ 1928255 (-)
yipf1 yipf1 other downstream 827231 1864515 ~ 1873127 (-)
LOC111197534 NA other downstream 1844198 855579 ~ 856160 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other upstream 192719 2910754 ~ 2970340 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other upstream 676169 3394204 ~ 3445386 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other upstream 1164335 3882370 ~ 3909671 (-)
G1308 NA other upstream 1381730 4099765 ~ 4101566 (-)
LOC111193794 LOC108442858 other upstream 1548966 4267001 ~ 4271970 (-)

Expression


Co-expression Network