G780


Basic Information

Item Value
gene id G780
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 2481385 ~ 2487165 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU1039
gttgctaaggtgttgctatggtatccggggtggttgctaaggtgttgctaggtggttgctaaggtgttgctaggcggttgctaaggtgttgctaggtggttgctaggtggttgctaggtggttgctagggtgttgctaggcggttgctaaggtgttgctatggtatccggggtggttgctaaggtgttgctaggtggttgctaggtggttgctagggtgttgctaggcggttgctaggtggttgctaggtggttgctagggtgttgctaggcggttgctaaggtgttgctatggtatccggggtggttgctaaggtgttgctaggtggttgctaggtgatgtatatgcataaatttgattaaatggTGTTTGCACGTTGCTACGCAACGTGCAAATACATCAATCAGCTATGCACGCTAGGTTGCTCTGGCCGTtcgggggtgtccaaacttttgacccgtggctccattacacacagtactggggggccggggtgtccaaacttttgacccgtggctccattacacacagtactggggggccggggtgtccaaacttttgacctaaCGCTGATTTATCCCATAGctgctccattacacacagtactggagttcTAGCTACCTGTCCTTCGATCTAGCTGCCGTCCTCCGATTGGCCCCATTCATTCCAATGGGGCCACTTCGTACGACATTCGTACGAAATCCGTACGTCGTAACTTTTCGTAACGCATATTTTCGGAAAGagctcaataagttctacaggtCCTCAATTGGTTTCCATTTAGTATTTCAAAAATTGCGACGTCCACGGGCGTGCAAAGTTctgcccattcattttcaatgggcaaaaaaacgcgtacttacgaagtttttacgaaaaacgtaagtccgatcggaaagctgtatacaagccaCCATTCCCGATAATGGACGCacgttttctcttttgaacGAAGTCGATATTTCGAAAACTGCGGCACTAGTTAACCGgacaaaaaacaggtggaataataataataataataataataataataagaagaataagacttaagaagaacaatactgtgattgcattactgcaatcacactaataataataataagaataagacttaagaagaacaatactgtgattgcattactgcaatcacactaataataat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1039 True 1165 lncRNA 0.36 5 2481385 2487165

Neighbor

gene id symbol gene type direction distance location
LOC103037050 LOC108432507 coding downstream 58744 2405363 ~ 2422641 (-)
LOC103036044 LOC108432506 coding downstream 86020 2376247 ~ 2395365 (-)
LOC103037376 NA coding downstream 108430 2324606 ~ 2372955 (-)
LOC103036651 LOC103036651,LOC108432502,LOC105899541,LOC105028795,LOC108278136,LOC107718120 coding downstream 369226 2103470 ~ 2112159 (-)
thap4 thap4 coding downstream 407742 2067978 ~ 2073643 (-)
LOC111193163 NA coding upstream 52651 2539816 ~ 2542341 (-)
LOC103035527 prrx1,prrx1a,LOC108444493,LOC107693734,LOC107722649 coding upstream 213193 2700358 ~ 2718035 (-)
fam129a NA coding upstream 348147 2835312 ~ 2892356 (-)
LOC103032964 LOC108444491,LOC107722586,LOC107718136,LOC107693739,LOC107589867 coding upstream 429624 2916789 ~ 2928066 (-)
LOC103034573 pla2g4a,LOC107718137,LOC107677770,LOC107693742,LOC107722605,LOC107589895,LOC107594671 coding upstream 499168 2986333 ~ 3036834 (-)
G748 NA non-coding downstream 78068 2400655 ~ 2403317 (-)
G750 NA non-coding downstream 80959 2398073 ~ 2400426 (-)
G696 NA non-coding downstream 228806 2250881 ~ 2252579 (-)
G694 NA non-coding downstream 234579 2239442 ~ 2246806 (-)
G671 NA non-coding downstream 254824 2145428 ~ 2226561 (-)
G782 LOC108432509 non-coding upstream 4450 2491615 ~ 2493843 (-)
G806 LOC108432510 non-coding upstream 36152 2523317 ~ 2526196 (-)
G810 csnk1g2 non-coding upstream 111681 2598846 ~ 2601377 (-)
G822 NA non-coding upstream 119940 2607105 ~ 2607722 (-)
G824 NA non-coding upstream 126176 2613341 ~ 2613813 (-)
znf414 NA other downstream 46984 2423713 ~ 2434401 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other downstream 553130 1920480 ~ 1928255 (-)
yipf1 yipf1 other downstream 608258 1864515 ~ 1873127 (-)
LOC111197534 NA other downstream 1625225 855579 ~ 856160 (-)
LOC103037308 LOC108440474,LOC108278112,LOC107585786,LOC107669856,LOC107745208 other downstream 1810670 589669 ~ 670715 (-)
G807 NA other upstream 63051 2550216 ~ 2600511 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other upstream 423589 2910754 ~ 2970340 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other upstream 907039 3394204 ~ 3445386 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other upstream 1395205 3882370 ~ 3909671 (-)
G1308 NA other upstream 1612600 4099765 ~ 4101566 (-)

Expression


Co-expression Network