LOC111194536


Basic Information

Item Value
gene id LOC111194536
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 11531569 ~ 11539837 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU204712
GTCTTGTTCACAATCAAAGCTCAGACAGAAACACCCTCTTTCTCTGAAGTCAAAGTAAGAAAAAAGTCTTTTTCTGCTGTGGAATGATGAAGATCCTGTTGGTGACTCTGCTTCTTGTTGGGTTGATCATGAGTGGTTCTGCCTTGAAATGTAACTACTGTATTACATCTGGAGCTGGAAGCACTTGCAGTGTCACCAAAGAAACCTGTGGCTATAAGAAAGATGCCTGCATCTCTGCCTTTTTCACCACTGCCCCCTATTCCCGCTTCAGAAGGTGCATTGCTATGTCTGACTGCGAAATCATGAAGATGCTCTCAAACCTCAACTTCCGATGCTGTCAGACAGACCTTTGCAATTAGGTCACAGAGACCCACTCACACTTGGTAGAGCTTGAAATTGGCAAATTAATCAAAGGCATAGATTCATAATAAAGATGAATATTATTCAAACGGCTATGGTTTTATTTTGAGTATTAAAGCAGTAGTATGAACTGA
>TU204713
ATTTTGTTTGAACTACGTCTTTAAAACAGCATTGTgagaatctatttttttttctccctgtaCTGCCTCTGCAGTCAGGAAGTGTAATTCACACTATGAGCCACCTCTTAAGAAGGATCCACCTCTttaacatgcatttctggacaagctgagagTGATTGTGAAATCATGGGTTTTCCAGGTGCCTGTGAAGTCATGTGATCAAGAAGGCGGGCTCTGACCTTCATATAAAAATGAAAGATGAAGCATTGGGACGTCTTGTTCACAATCAAAGCTCAGACAGAAACACCCTCTTTCTCTGAAGTCAAAGTAAGAAAAAAGTCTTTTTCTGCTGTGGAATGATGAAGATCCTGTTGGTGACTCTGCTTCTTGTTGGGTTGATCATGAGTGGTTCTGCCTTGAAATGTAACTACTGTATTACATCTGGAGCTGGAAGCACTTGCAGTGTCACCAAAGAAACCTGTGGCTATAAGAAAGATGCCTGCATCTCTGCCTTTTTCACCACTGCCCCCTATTCCCGCTTCAGAAGGTGCATTGCTATGTCTGACTGCGAAATCATGAAGATGCTCTCAAACCTCAACTTCCGATGCTGTCAGACAGACCTTTGCAATTAGGTCACAGAGACCCACTCACACTTGGTAGAGCTTGAAATTGGCAAATTAATCAAAGGCATAGATTCATAATAAAGATGAATATTATTCAAACGG
>XM_022678940.1
ATATAAAAATGAAAGATGAAGCATTGGGACGTCTTGTTCACAATCAAAGCTCAGACAGAAACACCCTCTTTCTCTGAAGTCAAAAAAAAAGTCTTTTTCTGCTGTGGAATGATGAAGATCCTGTTGGTGACTCTGCTTCTTGTTGGGTTGATCATGAGTGGTTCTGCCTTGAAATGTAACTACTGTATTACATCTGGAGCTGGAAGCACTTGCAGTGTCACCAAAGAAACCTGTGGCTATAAGAAAGATGCCTGCATCTCTGCCTTTTTCACCACTGCCCCCTATTCCCGCTTCAGAAGGTGCATTGCTATGTCTGACTGCGAAATCATGAAGATGCTCTCAAACCTCAACTTCCGATGCTGTCAGACAGACCTTTGCAATTAGGTCACAGAGACCCACTCACACTTGGTAGAGCTTGAAATTGGCAAATTAATCAAAGGCATAGATTCATAATAAAGATGAATATTATTCAAACGGC
>XM_022678941.1
TATAAAAATGAAAGATGAAGCATTGGGACGTCTTGTTCACAATCAAAGCTCAGACAGAAACACCCTCTTTCTCTGAAGTCAAAGTAAGAAAAAAGTCTTTTTCTGCTGTGGAATGATGAAGATCCTGTTGGTGACTCTGCTTCTTGTTGGGTTGATCATGAGTGGTTCTGCCTTGAAATGTAACTACTGTATTACATCTGGAGCTGGAAGCACTTGCAGTGTCACCAAAGAAACCTGTGGCTATAAGAAAGATGCCTGCATCTCTGCCTTTTTCACCACTGCCCCCTATTCCCGCTTCAGAAGGTGCATTGCTATGTCTGACTGCGAAATCATGAAGATGCTCTCAAACCTCAACTTCCGATGCTGTCAGACAGACCTTTGCAATTAGGTCACAGAGACCCACTCACACTTGGTAGAGCTTGAAATTGGCAAATTAATCAAAGGCATAGATTCATAATAAAGATGAATATTATTCAAACGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU204712 False 494 lncRNA 0.41 4 11536762 11539837
TU204713 True 707 lncRNA 0.42 5 11531569 11539795
XM_022678940.1 False 478 mRNA 0.42 4 11536732 11539796
XM_022678941.1 False 482 mRNA 0.42 4 11536733 11539796

Neighbor

gene id symbol gene type direction distance location
LOC103037664 LOC103037664,LOC108427112 coding upstream 259944 11268452 ~ 11271625 (+)
LOC103025147 vapa,LOC108280766,LOC108427204,LOC107750204,LOC107683769,LOC107684566 coding upstream 514943 10991105 ~ 11016626 (+)
LOC103031053 LOC108427202 coding upstream 595768 10887626 ~ 10935801 (+)
LOC103047654 LOC108427199 coding upstream 813751 10706239 ~ 10717818 (+)
ndufa13 ndufa13,nduad,LOC102786334,LOC106569554,LOC106600555 coding upstream 830052 10697700 ~ 10701517 (+)
LOC103036211 NA coding downstream 6099 11545936 ~ 11548240 (+)
LOC111194538 crygn,LOC108427116,LOC100699485,LOC107600194,LOC103353965 coding downstream 38002 11577839 ~ 11582219 (+)
ccdc94 ccdc94 coding downstream 130727 11670564 ~ 11676296 (+)
LOC103034421 shd,LOC107558290,LOC107729990,LOC107600191 coding downstream 138433 11678270 ~ 11705557 (+)
LOC103034099 NA coding downstream 174234 11714071 ~ 11721675 (+)
G151052 NA non-coding upstream 283143 11248103 ~ 11248426 (+)
G151028 NA non-coding upstream 422663 11108671 ~ 11108906 (+)
G151022 NA non-coding upstream 458376 11072899 ~ 11073193 (+)
G150976 NA non-coding upstream 514151 11016753 ~ 11017418 (+)
G150953 NA non-coding upstream 589566 10939983 ~ 10942003 (+)
G151138 NA non-coding downstream 120896 11660733 ~ 11713567 (+)
G151151 NA non-coding downstream 270214 11810051 ~ 11810310 (+)
G151181 NA non-coding downstream 423272 11963109 ~ 11963523 (+)
G151226 NA non-coding downstream 459486 11999323 ~ 12092980 (+)
G151227 NA non-coding downstream 542485 12082322 ~ 12084600 (+)
LOC103037335 LOC108280688,LOC108427207 other upstream 158 11278365 ~ 11531411 (+)
G150935 NA other upstream 790431 10740733 ~ 10741138 (+)
mau2 mau2,LOC106573592 other upstream 896028 10622659 ~ 10635541 (+)
LOC111194616 NA other upstream 1089326 10409793 ~ 10442243 (+)
LOC103040721 LOC108427133,LOC108280800 other upstream 1168194 10320269 ~ 10363375 (+)
LOC103037021 LOC103037021 other downstream 12702 11552539 ~ 11561544 (+)
LOC103035375 LOC108427208,LOC108280686,LOC100331938,LOC107713688,LOC107600193,LOC107558294,LOC107729982 other downstream 48072 11587909 ~ 11604041 (+)
LOC103033441 abhd8a,LOC108439870,LOC107696148,LOC107754588,LOC107687901,LOC107596234,LOC108280232,LOC103352801 other downstream 1561557 13101394 ~ 13131453 (+)
LOC103033117 LOC108439884,LOC100333521,LOC107696163,LOC107750940 other downstream 1563278 13103115 ~ 13109604 (+)
LOC107197015 NA other downstream 1690265 13230102 ~ 13236737 (+)

Expression


Co-expression Network