LOC103034421 (shd,LOC107558290,LOC107729990,LOC107600191)


Basic Information

Item Value
gene id LOC103034421
gene name shd,LOC107558290,LOC107729990,LOC107600191
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 11678270 ~ 11705557 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258435.3
TTTCCATGCAGAACAaagggaagagagagggagagggagagagaagtaGCCTGTGGGCTTTTCTCCTACAACTGAACTGAACTCAGTGCTGACTGCTCTGATTTAACCAGCTGGCtgccatctctccctctctctgtgtctctgctgGCTTCCACATTAGGATTAGGCAGCCTCTGCTGCGGAGGGGAGATGGGCTCCAGGTCTGATTTTTAGCGTGTTTTCCTGGGAAAGTCCTCTGGAGAAAACCACAAAGAAGAGGAGTAAGATATTCTAAGGCATCAATGATTGGGGCATATGAAAGACCCATGGCAAAGTGGTTGAAAGATTACCTAAGTTTTGGCAGCAGGAAAGGACCTCCGCAGCCGCCCAAACCAGACTACACAGAAAGCGAAATACTCCGGGCTTACCGCGTTCAAAAAGAACTGGACTTTGAAGACCCCTACGAACCTTCAGAGAACCGGGCTCAGAACGGTCAAGCCACTGCCGATCCGTTCCCTGCTTTTGGAACTGTTCTGCCTAACGGCGTGGAGGTCAAGATCGTTTCTCCTAAACACAGACTGATAAAAGTGGAATCTCAGGAATTTGGACGCTGCAAGATCCCATTAAGCATTGTGTCATTCGAGGAGCCCCATGCGCCTGTGGTtccttctgctccagcagtgggGGACACAGATTATTCGGACCCATTTGACGCTCGTCCAGACCCGCGGGCCCGTCCAGGCTGGGATCACAGCTCTGtggagaacagcagcagctacaTGGAGCCCTTTGAAGCTCAGAGAGTCATTACTGAGCTGCAGCACAGTTCGGAGCGTGGCCGATCTGGTTCCAGAGGCAGCCCTCAGCTGTACGACAGTCCGTACGAGGAGAGAAGCCGGCGATGGGGCGCTCCAgcagaggatgagagagagagccgATTGCCCCAGGATGATGAGAGGCCTGCCGATGAGTACGACCAGCCCTGGGAGTGGAAGAAGGAGAACATCTCCAAAGCCTTTGCTGttcagtttgAAGGGGGTGACTGGGACCGGTCCACATTGCCCCATGTGGAGCAACAGAGGAGAACCGGAGCTTCCAGAACCAGCCCTCCTTCAAGCAAGGCTACCAGCCTCCGCAAAGCCAGCGACCCTCACACCATTCTGGGAGAGAGAGTGGATCCCACCCTACCCCTGGACCAGCAAGTGTGGTACCATGGTGCTCTGACACGTTCTGATGCGGAGTCTCTGCTGACACTGTGTAAAGAGTGCAGCTACCTGGTGAGGAACAGTCAAACCAGCAGAAACGactactctctctccctcagGAGCTGCCATGGCTTCATGCATATGAAGTTTTCTCTGTCTCGTGATGGAAAGTACATCCTCGGTGAAAACAGTCCTCCATTCGACACCATACCAGAAGTCATCCACTACTACACCACCCACAAGCTGCCCATCCGTGGAGCAGAACACCTCTCCCTGCTCTTCCCTGTGGTGGTCCAGACGCTCTGATAACAAACTGGCTtgcacacgcatgcacacacacacaaacacacaaatacacataaacAGGCCTGGACTCATGCTtgcttacacacacagatatataaatatatgcacACTCAGGGCCTGATTTTGATCGACTCTCAGTAGCGCTTTGTATTTGATCAGAAGTGTAGAACTTTTGTGTGGGTTTGTAGTATTAGCCACTGCTGATCTGTCAGTATTTGATTTGAATCTGTTCCCAATGGAGTGCCATTGCTGTGCAGTTTTtagtattataaagtgattaTATGAATGTGGGGGCTGAAGCTGTTAGGCTATTTTTAAGCTCTTTTGAAGTGTATGAAACTACAAGCTTTTAAGAGCTTTGATGAGAGAGGGCTGCTCTTCTTATTTTCACTTGCCCAAAATGTTAACAATAGTATCTTTAGAACATGGGCTAGGCTGACCTGGAAGGGGATTGCCACCTATTCTCTGCTGTTCTATTTGAAATAATACACTTAtacactgattgtttttttttttgctgatgttTAAACTGCCTCATATATCCTCAAGCTGTAAGACTTTGTACTGTACCTTTAGAATCTATGCTTTATTGGAAGAGTCCTGCCAAAGTACACTCTATGGATAAAAAGagggatgcactaaatatttggcaGCCAAAATGATACGTTCAACATAAATTAAAAGACAATGATTTTCAGTTTGCTTTAAAAAGCCacaaaaaatagtgaaaaaataaTGTCACAAAAGTGGCAAGattaataaagataaagatagataTTAGGTATTTAGCAATGTATCAGGTTTCATTTTGTTCGGTTTCAGTTTTTGCCAAAATGTTCAATTTAGTGCTGTTTGGGATAGAGGCAAGTACGACATCCTATTATAAAGCATCCATTAGCATTAATATAAAGTAAATCTCCTGGCTCGCAATCTCTGTTCTAGTTATCTATTCCAAAGGTGTTCTGTGGGATCGAGGGCAACCCTTGAAAAACAACCCCATAACTTTACCATTATCCCTCCTCAACCAAACTTTATAGTTGGCATAGTGCAGCCAGGCAGTTGACATTCTCCTGGCATTCAGACCTTTGGCTATATAGTGTATGAACAGACTTAAAATGAatgatagaataattagaaa
>XM_022678945.1
ggtccggAATGTGAAAATCCTCTCCACGATTTTGCTCCAGCTGCATCTGCTTACtgtgctgcagcagagccgtCCAGGCAGTTTGCGTGAAACCCTGGGGCGGATTTTCACTTTCCTTCCGGACCTGGACTACCCCAAACTGTTTAAAGATTGGTTTAATTTGTATCTCTAAAGATAATTAACGTAACGTTACttcttaaaacaataaaataagtcgTTTACTATCCTATAGCTGGTGATAAATGTCTAGGTTAGATAGCTAgcttagtattatttatttatagttaaataCTGCTGAACACACTGAGAAAACCACAAAGAAGAGGAGTAAGATATTCTAAGGCATCAATGATTGGGGCATATGAAAGACCCATGGCAAAGTGGTTGAAAGATTACCTAAGTTTTGGCAGCAGGAAAGGACCTCCGCAGCCGCCCAAACCAGACTACACAGAAAGCGAAATACTCCGGGCTTACCGCGTTCAAAAAGAACTGGACTTTGAAGACCCCTACGAACCTTCAGAGAACCGGGCTCAGAACGGTCAAGCCACTGCCGATCCGTTCCCTGCTTTTGGAACTGTTCTGCCTAACGGCGTGGAGGTCAAGATCGTTTCTCCTAAACACAGACTGATAAAAGTGGAATCTCAGGAATTTGGACGCTGCAAGATCCCATTAAGCATTGTGTCATTCGAGGAGCCCCATGCGCCTGTGGTtccttctgctccagcagtgggGGACACAGATTATTCGGACCCATTTGACGCTCGTCCAGACCCGCGGGCCCGTCCAGGCTGGGATCACAGCTCTGtggagaacagcagcagctacaTGGAGCCCTTTGAAGCTCAGAGAGTCATTACTGAGCTGCAGCACAGTTCGGAGCGTGGCCGATCTGGTTCCAGAGGCAGCCCTCAGCTGTACGACAGTCCGTACGAGGAGAGAAGCCGGCGATGGGGCGCTCCAgcagaggatgagagagagagccgATTGCCCCAGGATGATGAGAGGCCTGCCGATGAGTACGACCAGCCCTGGGAGTGGAAGAAGGAGAACATCTCCAAAGCCTTTGCTGttcagtttgAAGGGGGTGACTGGGACCGGTCCACATTGCCCCATGTGGAGCAACAGAGGAGAACCGGAGCTTCCAGAACCAGCCCTCCTTCAAGCAAGGCTACCAGCCTCCGCAAAGCCAGCGACCCTCACACCATTCTGGGAGAGAGAGTGGATCCCACCCTACCCCTGGACCAGCAAGTGTGGTACCATGGTGCTCTGACACGTTCTGATGCGGAGTCTCTGCTGACACTGTGTAAAGAGTGCAGCTACCTGGTGAGGAACAGTCAAACCAGCAGAAACGactactctctctccctcagGAGCTGCCATGGCTTCATGCATATGAAGTTTTCTCTGTCTCGTGATGGAAAGTACATCCTCGGTGAAAACAGTCCTCCATTCGACACCATACCAGAAGTCATCCACTACTACACCACCCACAAGCTGCCCATCCGTGGAGCAGAACACCTCTCCCTGCTCTTCCCTGTGGTGGTCCAGACGCTCTGATAACAAACTGGCTtgcacacgcatgcacacacacacaaacacacaaatacacataaacAGGCCTGGACTCATGCTtgcttacacacacagatatataaatatatgcacACTCAGGGCCTGATTTTGATCGACTCTCAGTAGCGCTTTGTATTTGATCAGAAGTGTAGAACTTTTGTGTGGGTTTGTAGTATTAGCCACTGCTGATCTGTCAGTATTTGATTTGAATCTGTTCCCAATGGAGTGCCATTGCTGTGCAGTTTTtagtattataaagtgattaTATGAATGTGGGGGCTGAAGCTGTTAGGCTATTTTTAAGCTCTTTTGAAGTGTATGAAACTACAAGCTTTTAAGAGCTTTGATGAGAGAGGGCTGCTCTTCTTATTTTCACTTGCCCAAAATGTTAACAATAGTATCTTTAGAACATGGGCTAGGCTGACCTGGAAGGGGATTGCCACCTATTCTCTGCTGTTCTATTTGAAATAATACACTTAtacactgattgtttttttttttgctgatgttTAAACTGCCTCATATATCCTCAAGCTGTAAGACTTTGTACTGTACCTTTAGAATCTATGCTTTATTGGAAGAGTCCTGCCAAAGTACACTCTATGGATAAAAAGagggatgcactaaatatttggcaGCCAAAATGATACGTTCAACATAAATTAAAAGACAATGATTTTCAGTTTGCTTTAAAAAGCCacaaaaaatagtgaaaaaataaTGTCACAAAAGTGGCAAGattaataaagataaagatagataTTAGGTATTTAGCAATGTATCAGGTTTCATTTTGTTCGGTTTCAGTTTTTGCCAAAATGTTCAATTTAGTGCTGTTTGGGATAGAGGCAAGTACGACATCCTATTATAAAGCATCCATTAGCATTAATATAAAGTAAATCTCCTGGCTCGCAATCTCTGTTCTAGTTATCTATTCCAAAGGTGTTCTGTGGGATCGAGGGCAACCCTTGAAAAACAACCCCATAACTTTACCATTATCCCTCCTCAACCAAACTTTATAGTTGGCATAGTGCAGCCAGGCAGTTGACATTCTCCTGGCATTCAGACCTTTGGCTATATAGTGTATGAACAGACTTAAAATGAatgatagaataattagaaa
>XM_022678946.1
GACATTTCCATGCAGAACAaagggaagagagagggagagggagagagaagtaGCCTGTGGGCTTTTCTCCTACAACTGAACTGAACTCAGTGCTGACTGCTCTGATTTAACCAGCTGGCtgccatctctccctctctctgtgtctctgctgGCTTCCACATTAGGATTAGGCAGCCTCTGCTGCGGAGGGGAGATGGGCTCCAGGTCTGATTTTTAGCGTGTTTTCCTGGGAAAGTCCTCTGGAGAAAACCACAAAGAAGAGGAGTAAGATATTCTAAGGCATCAATGATTGGGGCATATGAAAGACCCATGGCAAAGTGGTTGAAAGATTACCTAAGTTTTGGCAGCAGGAAAGGACCTCCGCAGCCGCCCAAACCAGACTACACAGAAAGCGAAATACTCCGGGCTTACCGCGTTCAAAAAGAACTGGACTTTGAAGACCCCTACGAACCTTCAGAGAACCGGGCTCAGAACGGTCAAGCCACTGCCGATCCGTTCCCTGCTTTTGGAACTGTTCTGCCTAACGGCGTGGAGGTCAAGATCGTTTCTCCTAAACACAGACTGATAAAAGTGGAATCTCAGGAATTTGGACGCTGCAAGATCCCATTAAGCATTGTGTCATTCGAGGAGCCCCATGCGCCTGTGGTtccttctgctccagcagtgggGGACACAGATTATTCGGACCCATTTGACGCTCGTCCAGACCCGCGGGCCCGTCCAGGCTGGGATCACAGCTCTGtggagaacagcagcagctacaTGGAGCCCTTTGAAGCTCAGAGAGTCATTACTGAGCTGCAGCACAGTTCGGAGCGTGGCCGATCTGGTTCCAGAGGCAGCCCTCAGCTGTACGACAGTCCGTACGAGGAGAGAAGCCGGCGATGGGGCGCTCCAgcagaggatgagagagagagccgATTGCCCCAGGATGATGAGAGGCCTGCCGATGAGTACGACCAGCCCTGGGAGTGGAAGAAGGAGAACATCTCCAAAGCCTTTGCTGttcagtttgAAGGGGGTGACTGGGACCGGTCCACATTGCCCCATGTGGAGCAACAGAGGAGAACCGGAGCTTCCAGAACCAGCCCTCCTTCAAGCAAGGCTACCAGCCTCCGCAAAGCCAGCGACCCTCACACCATTCTGGGAGAGAGAGTGGATCCCACCCTACCCCTGGACCAGCAAGTGTGGTACCATGGTGCTCTGACACGTTCTGATGCGGAGTCTCTGCTGACACTGTGTAAAGAGTGCAGCTACCTGGTGAGGAACAGTCAAACCAGCAGAAACGactactctctctccctcagACTGTGATCATGTGACCATAACGAGGCTGGAAGTAGAGTGACAGAGTGACACTCGTACACCAAACTACTTCCTAACCTGAGAAAAAGGGGAACAGCCAAATAAAGTAATCTAATTTTTGCATTTCACATCAATATCATGACGTTTAACAGCCTTATTGCACATCACATTTTGGGACATATCGTACATGTACTGCTAACCTTTAAAGCGCGGCATGTCCTTGCACATATTTAGCTCTCTCCACTACTTCATCCATATGCTCAGGTCTTGTAGCTGTCTGCTGGCTCAAGCTGTCCACTATGGGTAGCAGGTCAGGTCTGCTGCCCTGCTCTTTACTGTCATCTTTTTGCTCCTGCACCTCTTTTTCAACCTTTTTCAACCTTTAAAGCCCAGCTTAAAGCCTGTTTTCTGTCAAAAGCTGTCACTTGTCCCAAACCCCACCTGTCATGgcttgaatttatttatttgattccCCCTCTCTTCCTTCTGAAGTTCTTGTGCGACCTTGGGTATGTGAAAGGTGCTACATCAACTATTCTCGGTGTTCTTATCTTTTTAAAagataatgtttatttttcttcaagAAGAAAATCACATGTGGGTATGTCTTTTTTGCTGT

Function

symbol description
shd Predicted to enable phosphotyrosine residue binding activity.

NR:

description
PREDICTED: SH2 domain-containing adapter protein D

GO: NA

KEGG:

id description
K23697 SHB_D_E_F; SH2 domain-containing adapter protein B/D/E/F

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258435.3 False 2628 mRNA 0.46 8 11678274 11705557
XM_022678945.1 True 2695 mRNA 0.45 8 11678863 11705557
XM_022678946.1 False 1924 mRNA 0.50 8 11678270 11699405

Neighbor

gene id symbol gene type direction distance location
ccdc94 ccdc94 coding upstream 1974 11670564 ~ 11676296 (+)
LOC111194538 crygn,LOC108427116,LOC100699485,LOC107600194,LOC103353965 coding upstream 96051 11577839 ~ 11582219 (+)
LOC103036211 NA coding upstream 130030 11545936 ~ 11548240 (+)
LOC103037664 LOC103037664,LOC108427112 coding upstream 406645 11268452 ~ 11271625 (+)
LOC103025147 vapa,LOC108280766,LOC108427204,LOC107750204,LOC107683769,LOC107684566 coding upstream 661644 10991105 ~ 11016626 (+)
LOC103034099 NA coding downstream 8514 11714071 ~ 11721675 (+)
LOC103042008 NA coding downstream 21978 11727535 ~ 11759214 (+)
LOC103033776 plpp2,LOC103033776,LOC108427214,LOC107558288,LOC107729984,LOC107713693,LOC107667850 coding downstream 57435 11762992 ~ 11807474 (+)
creb3l3 NA coding downstream 423612 12129169 ~ 12175408 (+)
LOC103040483 LOC108427120 coding downstream 478272 12183829 ~ 12187233 (+)
G151052 NA non-coding upstream 429844 11248103 ~ 11248426 (+)
G151028 NA non-coding upstream 569364 11108671 ~ 11108906 (+)
G151022 NA non-coding upstream 605077 11072899 ~ 11073193 (+)
G150976 NA non-coding upstream 660852 11016753 ~ 11017418 (+)
G150953 NA non-coding upstream 736267 10939983 ~ 10942003 (+)
G151151 NA non-coding downstream 104494 11810051 ~ 11810310 (+)
G151181 NA non-coding downstream 257552 11963109 ~ 11963523 (+)
G151226 NA non-coding downstream 293766 11999323 ~ 12092980 (+)
G151227 NA non-coding downstream 376765 12082322 ~ 12084600 (+)
G151229 NA non-coding downstream 383621 12089178 ~ 12095115 (+)
LOC103035375 LOC108427208,LOC108280686,LOC100331938,LOC107713688,LOC107600193,LOC107558294,LOC107729982 other upstream 74229 11587909 ~ 11604041 (+)
LOC103037021 LOC103037021 other upstream 116726 11552539 ~ 11561544 (+)
LOC111194536 NA other upstream 138433 11531569 ~ 11539837 (+)
LOC103037335 LOC108280688,LOC108427207 other upstream 146859 11278365 ~ 11531411 (+)
G150935 NA other upstream 937132 10740733 ~ 10741138 (+)
LOC103033441 abhd8a,LOC108439870,LOC107696148,LOC107754588,LOC107687901,LOC107596234,LOC108280232,LOC103352801 other downstream 1395837 13101394 ~ 13131453 (+)
LOC103033117 LOC108439884,LOC100333521,LOC107696163,LOC107750940 other downstream 1397558 13103115 ~ 13109604 (+)
LOC107197015 NA other downstream 1524545 13230102 ~ 13236737 (+)
LOC103039742 LOC108439864,LOC108280459 other downstream 1592037 13297594 ~ 13335076 (+)
G151621 NA other downstream 1895052 13600609 ~ 13633602 (+)

Expression


Co-expression Network