LOC103038185


Basic Information

Item Value
gene id LOC103038185
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 13149109 ~ 13171989 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235576.2
GTGGGGAAGTGCCAGGACCCTGCCACATGTGATTAGTGAAACAACGGTAATCTGAGCTAGTGTGTGATCACTAGCTCCGTCTGAGGAGGAGCCTCAAACacagggaggagagagagggagagagggaaagagagaacgagagagagagagcaaccaGGAGGTGTGTACACATGCATACACTCAGCCTGTCCTTAAACTCTAGACACACTCAGATATTCACAGACGCTCAGACCTTGCCATGTAAACGTATCCACCATGCAAGAGGAGATGCTATCAGGACGTGGACAGACAGTGACAGACGTTTAAAACTCTTAAGGCAGAGAACAATTGTCATTTACCAAGAAGTATTGTGTTTTACACAAGTACCACTCATGATTTGCTAGACCTGGACTTGCCTACTGTCCTATACTACAGGATGAGGATACACCATCAAGCCTACCTCCAGGGTATTTTGACTGCAAGTCAAATATGCAAGTAATGTAGATGCTGAGCAACAACCTGAAATCAACCTGAAACAACTATGACGAGGAACTACCAGTTTTAAATCGTGACGACTGCCCACTCAGGTGCACCTGAAGAAACGCCAACCCAGTGCAACTGAGTCCGTGTCAATTCCAGCCCAGCTTAGCAGGAGGTTCTCCAGTGCCCCTCCCTCAATACATGGATGTACGAGTCACAGGGGGAGCACAATCTGTCGTCCCCATTCCTGGCTACCAGTGCAAAATGAGGGATTTCCCCTCCCCACCTCTACCCTGAGGTCATCCCAACACAACGCCACCCAGATAAGTCCGACTTAGCCGGGCGCTCGAGTTTCAATGCTCCACACCATTCTAAAATGAAGTTATGGAAAGGGGCCATTCTTGCCTTAATCCTCATTAGCACTGCTCTTTCACTCCTCCTCACCAAAACCATGCTGCCTGCCGGGGCCACCGACCCCAGGGCCTCTGCCTCGTCCACGCGACTTTCATCAGCGACACCACCATTAGGACCACCACCGTCACCATCATTTTCACCCGAAGCGACGGGTCTTCGGCGGGTGGCTAGATCAGCGGACAGCGTGGGCTCTCTGCTATCACAGTTTTCCTACTTGTTCCAGAGCTTCACAGAGGGGGAGCTGCAGAGGGTGATCAGAATGCTGGTGAACAGACAGTCCAAAAGGTCAAGCAAGGTGGTGGCAAGTAGCCGGGGCAGGAGAACCAAGCGGGCAAGGATGGGCCCAAACCAATGCAAGTTGCACAAGAAGCAGCTGAGGGTAAGTGACCTGGGCCTGGGCTACGACAGTAATGAGACTGTGGTCTTCCAATACTGCAGCGGCAAATGTACTAGCCGCCGGGGCACCTATGACATAGTGATGGACCACTTGCGGCTCAACAAGTCATCTGGTCAGAAGCGCAAAGCTTCAAACGTGGAAGGTGCCAGGGACCGTGAACCCTACAGCCCCTGCTGCCGGCCCACTAAGTATGAGGGAAACTTGGTGTTCTTTGGCAACAACGGAAAATTTGGCATTGTCCCGAATGTGTCAGCCAGGGAGTGCGGCTGTGTATGACCTCAGAAAACAGCGAAATGGAGGATGTCTGAGTTGCAGTTGAGGCTTCAGAGTGGGTGGTGGCAAGAGCAGCTATAGTAGAGGCCGTGGAAGTCTTTGGACAAGCTCATTGTGGTCTACAGTCACCTCCATGGAAATGATGGAAGCTTCAGAAGATACAGGATGTCTACAGTCATCTCTGTGCAAATAGTGGAAGCTTCATAGGGGTTTCAGTCAACCCAACAGTCAAAGCCCCGGAGATGCCACTGTCAACGCTGTAAAAGATACAGAGATGCAACTGCAAATGCTACTGTAGTGACGGGTCCAGGAAGGCTACAGTCTACTCAGTCAAGCTTCTCAGCGGTTTCAGTCAACAACGTAACAGTCAAAACCTCCAAGACAGTACTGTGAAGGATTCCACAATGAGGAAGCTACAGTCAACTCCGTCAGGCTGGTTCCAGTCAGCATTATGGTAACAGTGACGCTTACTCCCATATGCTTGGAAACGTACGtgaaaaacgaattctgtgtgTGTCATAATGGAAACCACAGAAGCCACAGCAGACAGGAAGGCTATGTCTGACACTCAGGCGGAACGGGATGGTTTGTAGACAGCTGGAAATTTGTGATTACTCTTGCTTTCTGGTTCACGTGCTTCATGGATCAATGGAGAACATGGTTCTAAGAAGAtctaaagaggaaaaaaaacaaaaacaatcttGTGATGGGACCTGTAGTGCAAGCTTTCAGTGCTGAGACACTACTCTTGCCTTTCACTGAACACAAAATTGCTGGGTGACAAATGCAATTTTAAGGAGAACTTCACGTCAGTCTAAATGAACAGAGATTTTACAGTTCAGAAGAAATTCTAAAGTATACAGTCTTTTGTCATGAATGCTATGTGTATACTGAAGTAAGATGTTAAACACAGCTACCTCATTTACTTTGTGTAAGAAAAATTAACATGCAATGAATCTAGCTGCGCTACACCCATTCTCCTGGGGCTGACTATTCACTGAtagaaatcacacacacaaacacaagaacagatacacacaaacacatttacttAAACCCCTTTGTGTCTTCTCAGGTCATAACCTCTAAATAACAACCTGCATTGTCACTTGAAGAGAACCCCCATTTATTATAATAGCTGCTTTTATTTTCACTATAAAGCCTTGCCAAATCTGTCCAATAGAACCATACATAGAACTAAAAATCAGACATAATCACTTAACATTTTAATCTCTGCAGAAAGATCAAAGAATTTGTTTCTTTAACCCTATCCTAACTATGATTTGTCCTCTATTAGTCCTGAGTGTTTTTACAGTAGGCTGTAACAGTAACGTAAGAACACCTGCTGAGATTGTACAGCACAAACATGCATTTGCAGAGTGTCAACCCCGTGTTGGCATTCGCTTTCCCATTAGAGATTATTCAAAATTAACCTGTTTGGCTGAAGCTGAAAtcgaacaaaataaaatatttgactgGAAGAATTTTCCAGcaagatataataaaattgaTACACCTGTGCATACGAACTGCATGTCTTGTGCAAGTTTTGCGCCTTAAGAGCAACTCCCAGGTGTTAGAAAATACTAAAAGACAGTGAGCAAAGGAGTACATCTAAATATAATCAGgtacatgtattttaaattcTGCTTTCCTACACTCAGATCTTGGTGCCAGAATGTAGGAAAGGCCTATAGCTTCTTTTTAAAGATTGACTTACACAACAATCTGTTTGCTCACGATTCTTAAAGATTACCACAGTACATCCAAGAGAACAATCTGTTGTGAGTCAGACAGTGGCAGGACAGACGCGTGCATATTGGGTTGTCCCAGATCTGTAACCCACTGCACATACTGTTAACATCTAATTCCTCCTAAGTCAACAGAGCTATAAATAGACAAATCTCTACTACACAGAACAGTTAGATAACACTTGTGTCCACTGATTTTCCTAGTTTTGTCAAGCTGACTTGTTCGCCGCAAACAGGTGGGCAGGTGGGCAGGTGGGCAGGGGGGCAGTCTGGGCTGCCAAGGAGGTTGCGGAACTGTGGTCAAATTGAATAACGAGAACTTTAAGGTAATTAAGAACAAAACCACAAATGAGATTGGAGGCAGGCCGGGAACCATCAAGGCCTAAACATGGCCGGCCTTCAAAGATAATGGACTTACAGTAAAAACaaggcagcagcagctgagTGGACACGCAGCCTCCAGCCCACACCAGGGCCTGGCCGCCAGATTTACCTACAGGACAACAAACAGACCAGACCAGATTGAGAACCACTGTACACACATAGGCTTCAGATGGtaggaaaaaacacatttatcgAACGCTGGGCTGTCTTCAAAGTTCTTCAGCATGAGCCAGAAGCAGCATATAAATCTGCTAATTGGATATTCTTGAAAGAGATTTTCCTGAGCAGGCGTCCGTGCGGATTATATTAGCCACTTAAAAAACTGTTACAATTCTTCTTgaaatttatttgatttgtatttctcGGAAAATCGAAGGAATATAACAAAGTGTGTGATGCAATCAGATCATGctgcaaaatatatttatgcacACATCAATTgaacactttattggaaacacttcatatgtaattcataaaaactaataattagtcattaaataatttatcCAATCAGCCAATCTACCACAATATTGTGCATAAAAAATACCAAAACGCTGCATAGTAAACGCAAAATGATTATAATGATATTATCATCTACTACATGAtatggcatatatatatatataagaattaaAGATGTTCTGAGAGCAAAAGCAGCCAGTATTTTTATGGTGTTCCTCATAAAGTGTTCAgtgggtgtgtatatatatatatatatatatatatatatat

Function

GO:

id name namespace
GO:0015250 water channel activity molecular_function
GO:0005372 water transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235576.2 True 4413 mRNA 0.44 4 13149109 13171989

Neighbor

gene id symbol gene type direction distance location
napg napg,LOC107750913,LOC107696142,LOC107687900,LOC107596233 coding upstream 124540 13013783 ~ 13024569 (+)
LOC107197877 LOC108442433,LOC108280639,LOC106596660,LOC106569828,LOC107750908 coding upstream 273381 12848418 ~ 12875728 (+)
LOC103039850 celf5,LOC108444550,LOC108280171,LOC107750904,LOC107667861,LOC107696073,LOC107729965 coding upstream 626815 12295483 ~ 12522294 (+)
LOC103040483 LOC108427120 coding upstream 961876 12183829 ~ 12187233 (+)
creb3l3 NA coding upstream 973701 12129169 ~ 12175408 (+)
LOC103033765 LOC108439882,LOC108280735,LOC107552688,LOC107750941,LOC107696794,LOC107754590 coding downstream 4669 13176658 ~ 13181747 (+)
LOC111194542 LOC108439873 coding downstream 86146 13258135 ~ 13265901 (+)
LOC103039137 LOC108439880,LOC108280256,LOC107552681 coding downstream 95799 13267788 ~ 13270876 (+)
trnar-ccg_2 NA coding downstream 103522 13275511 ~ 13275583 (+)
trnar-ccg_3 NA coding downstream 107863 13279852 ~ 13279924 (+)
G151410 NA non-coding upstream 155511 12993364 ~ 12993598 (+)
G151377 NA non-coding upstream 336235 12777716 ~ 12812874 (+)
G151347 NA non-coding upstream 414842 12732022 ~ 12734267 (+)
G151302 NA non-coding upstream 542022 12544064 ~ 12607087 (+)
G151272 NA non-coding upstream 855588 12293082 ~ 12293521 (+)
G151504 NA non-coding downstream 42371 13214360 ~ 13214585 (+)
G151517 NA non-coding downstream 120342 13292331 ~ 13292685 (+)
G151518 NA non-coding downstream 122651 13294640 ~ 13296287 (+)
G151559 NA non-coding downstream 203187 13375176 ~ 13375562 (+)
G151561 LOC103036308 non-coding downstream 204378 13376367 ~ 13377974 (+)
LOC103033441 abhd8a,LOC108439870,LOC107696148,LOC107754588,LOC107687901,LOC107596234,LOC108280232,LOC103352801 other upstream 17656 13101394 ~ 13131453 (+)
LOC103033117 LOC108439884,LOC100333521,LOC107696163,LOC107750940 other upstream 39505 13103115 ~ 13109604 (+)
LOC103035375 LOC108427208,LOC108280686,LOC100331938,LOC107713688,LOC107600193,LOC107558294,LOC107729982 other upstream 1545068 11587909 ~ 11604041 (+)
LOC103037021 LOC103037021 other upstream 1587565 11552539 ~ 11561544 (+)
LOC111194536 NA other upstream 1609272 11531569 ~ 11539837 (+)
LOC107197015 NA other downstream 58113 13230102 ~ 13236737 (+)
LOC103039742 LOC108439864,LOC108280459 other downstream 125605 13297594 ~ 13335076 (+)
G151621 NA other downstream 428620 13600609 ~ 13633602 (+)
G151634 NA other downstream 474691 13646680 ~ 13684847 (+)
pcp4 NA other downstream 586453 13758442 ~ 13762513 (+)

Expression


Co-expression Network