LOC103039137 (LOC108439880,LOC108280256,LOC107552681)


Basic Information

Item Value
gene id LOC103039137
gene name LOC108439880,LOC108280256,LOC107552681
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 13267788 ~ 13270876 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235578.3
TATGCTAATACAAATCCATGGGTTGATTAACATATGCCCTATATAAGATTTAAGCTCCTCAGCCCAGTTTTACTGTTCTTAGAATTTGCTCTTAAACAGCCTGATATGCCTGTGTTTGCGCAGGTGTTGAGGCATTTTCACTTTGTTTGTCAAGGTAATTGTTGTTCCTGTATTAAAATATCCTCGTTTGTCTAAATTAATCGATCTATTTTTAAGGACGTTAACCACCCGCGGTGGGCAAACTTCCTTGCTGTGACTGCTTAGGAGGTCTGCTTGCGCATCCTGTGAATTTTCATACCAGGAAACTCACCAAAAAGAGCATTTACACaactttaattaactttttgtttagtattaaacatattaagtGTATAGTTTATAAATTCATaagtaatgtaaataataaacagtaattgttCTCCAGGTCTCACTTTGGAAGATCTCCTGGTTCTCTAATCACCTAATCACCTGATCCCCCAGTCAGCTTCACACCTTGTTAACACCGCCATTAGATTTGCGTTACATTCCCTTATTATTGACTTACATTTGCGACCAAATAGCACCTCTTTATCGCTGTTTACCGAAGAGTTAACAGTGCTAAGCGTTTTCATATATAATGGTGCCtgcatggagagcttcagtcaGTTGCTTCCAAGCTTCTACCAGGAGAAAACCTCAGAGAGCTCCACAACCAAGCTTCTGCCAGGAGAAAACTACAAAAAAGTCCAAATTCAAGCCTACGCCAAGAGGAAACTACAGAACAAAATTCTACAAGAAGATTCAGCAAGCTCCACTCCATCACCTACACGGAGTACCGAGATGTTGCCTGTTATTGTCTTTTTCTTGATGCCCATGGTAGGTCTTGGGAACCCCAGACCATCTTTTAACCACTTGAGGAAACCCTTTACCGTGGAAGGCGAGTCTGAAGAAGTTCGCTCTGCTGCTATCAAAAGGCTTTTAGAAGTTTTCGGCATGGAGGATCCTCCTGCCACCCCTCCTCGATCCCACAAGCAGCCCCCGCAGTACATGCTGGATTTGTACAACACTGTGGCGGACGTGGACGGCGTGACCAAGGACCCCACGGTGCTGGAGGGCAACACGGTTCGCAGTTTCTTTGATAAACTGCGCAGCGACCAGATCGAGTATTTGTTCAACTTGACCACAGTCGCAAGAAGCGAAAAACTCCTCACTGCCGAGCTCCATCTTTTCAAACTAAGACCTCAAGCATCACTCACATTCAACAGACATCACTTCTGCCAGGTCAATGTCTATCAGGTTCTTGATACCAGCAAAATGAACATCTCCCATAACAAGAAGCTTGTGTCTTCAAGGCTTATTCCCATTCATTCTAATGGTTGGGAGGTTTTCACCATCTCTCAGGCTATCCGAACATGGACCATGAGCCATCACAGTAACCTGGGTCTACTGGTCACAGTGCGCACTCTGTCAGGCAATCAGATGGACCTGAGAACAGTGCGATTTGCCTCAGGACAGAACCACCACCATACCAAACAGCCCATGCTGGTTCTTTTTACTGATGATGGCAGGCGCGCTGCTCCTATGGAGGGTATTGTAAAAGTTTCTGGAGATTCCCCAGCTGTTCCCAGTCTCCCTCTGCCCAGCCTGACCCTCCCTGTGGTTGGGCATCGCATCCCCCGCTCTCTCGACTATGAAGAGGACAGGGAGAGGTTGCCTTGTCAGCGCCTACCGCTCTACGTGGACTTTGAGGAGATTGGCTGGTCCGGTTGGATTGTGTCCCCCCGTGGCTACAACGCTTACCACTGCAAAGGCTCCTGTCCCTTTCCTCTGGGACAGAACATGAGACCCACCAACCACGCCACTGTGCAGTCCATCATCAACGCACTCAAGCTCACCAAAGGCATCGAGACGCCCTGCTGTGTTCCCGACAAGCTCTTCTCCATCAACCTCCTGTACTTTGACGATGATGAGAATGTAGTCCTAAAGCAGTATGATGATATGGTGGCAGGAAGCTGTGGGTGCCACTGAGATCCCAAAGCTTATATGaaactgtatatatgtaaatagcCCAGTCAATTCAGATACAGGTACAAGAAATGGCAACACTTCTAACTGAAAAGAAAATACCTCtcaacaacatcaaaaacacagcATCCTGATCCCAACATCTTTTAGGGTTTGTTTCATGGAATAGTTTCTACTTGATTTACGCATGAATAGCACTGATGACTGACGTTGCTGGTATCATAAAAATGGACTTCAGCTGAAACTATGATGGACTGCATGGATGAATTACCCAGTCCCTCTTACAGctttgtaaaatatgtaaatagacATAAATTCTAATATATGGAGGATCTCGAGGTGGTTACTTGTAAAACATGTACATTTGTAAAATTGCATGTTGTGAACTATTTTAAAGTCGTAATAAATTGTAAGACAAAATGGCTTGTGTGGAGCAATTATTTAAAGAGGTTGAAATAT

Function

NR:

description
PREDICTED: bone morphogenetic protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235578.3 True 2463 mRNA 0.44 5 13267788 13270876

Neighbor

gene id symbol gene type direction distance location
LOC111194542 LOC108439873 coding upstream 1887 13258135 ~ 13265901 (+)
LOC103033765 LOC108439882,LOC108280735,LOC107552688,LOC107750941,LOC107696794,LOC107754590 coding upstream 86041 13176658 ~ 13181747 (+)
LOC103038185 NA coding upstream 95799 13149109 ~ 13171989 (+)
napg napg,LOC107750913,LOC107696142,LOC107687900,LOC107596233 coding upstream 243219 13013783 ~ 13024569 (+)
LOC107197877 LOC108442433,LOC108280639,LOC106596660,LOC106569828,LOC107750908 coding upstream 392060 12848418 ~ 12875728 (+)
trnar-ccg_2 NA coding downstream 4635 13275511 ~ 13275583 (+)
trnar-ccg_3 NA coding downstream 8976 13279852 ~ 13279924 (+)
trnar-ccg_4 NA coding downstream 9820 13280696 ~ 13280768 (+)
trnar-ccg_5 NA coding downstream 10278 13281154 ~ 13281226 (+)
trnar-ccg_6 NA coding downstream 10753 13281629 ~ 13281701 (+)
G151504 NA non-coding upstream 53203 13214360 ~ 13214585 (+)
G151410 NA non-coding upstream 274190 12993364 ~ 12993598 (+)
G151377 NA non-coding upstream 454914 12777716 ~ 12812874 (+)
G151347 NA non-coding upstream 533521 12732022 ~ 12734267 (+)
G151302 NA non-coding upstream 660701 12544064 ~ 12607087 (+)
G151517 NA non-coding downstream 21455 13292331 ~ 13292685 (+)
G151518 NA non-coding downstream 23764 13294640 ~ 13296287 (+)
G151559 NA non-coding downstream 104300 13375176 ~ 13375562 (+)
G151561 LOC103036308 non-coding downstream 105491 13376367 ~ 13377974 (+)
G151565 NA non-coding downstream 112362 13383238 ~ 13383487 (+)
LOC107197015 NA other upstream 31051 13230102 ~ 13236737 (+)
LOC103033441 abhd8a,LOC108439870,LOC107696148,LOC107754588,LOC107687901,LOC107596234,LOC108280232,LOC103352801 other upstream 136335 13101394 ~ 13131453 (+)
LOC103033117 LOC108439884,LOC100333521,LOC107696163,LOC107750940 other upstream 158184 13103115 ~ 13109604 (+)
LOC103035375 LOC108427208,LOC108280686,LOC100331938,LOC107713688,LOC107600193,LOC107558294,LOC107729982 other upstream 1663747 11587909 ~ 11604041 (+)
LOC103037021 LOC103037021 other upstream 1706244 11552539 ~ 11561544 (+)
LOC103039742 LOC108439864,LOC108280459 other downstream 26718 13297594 ~ 13335076 (+)
G151621 NA other downstream 329733 13600609 ~ 13633602 (+)
G151634 NA other downstream 375804 13646680 ~ 13684847 (+)
pcp4 NA other downstream 487566 13758442 ~ 13762513 (+)
LOC103044755 LOC108443098 other downstream 649549 13920425 ~ 13943509 (+)

Expression


Co-expression Network