trnar-ccg_6


Basic Information

Item Value
gene id trnar-ccg_6
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 13281629 ~ 13281701 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnar-ccg_6
GGCCCAGTGGCCTAATGGATAAGGCATCAGCCTCCGGAGCTGGGGATTGTGGGTTCAAGTCCCATCTGGGTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnar-ccg_6 True 73 tRNA 0.60 1 13281629 13281701

Neighbor

gene id symbol gene type direction distance location
trnar-ccg_5 NA coding upstream 403 13281154 ~ 13281226 (+)
trnar-ccg_4 NA coding upstream 861 13280696 ~ 13280768 (+)
trnar-ccg_3 NA coding upstream 1705 13279852 ~ 13279924 (+)
trnar-ccg_2 NA coding upstream 6046 13275511 ~ 13275583 (+)
LOC103039137 LOC108439880,LOC108280256,LOC107552681 coding upstream 10753 13267788 ~ 13270876 (+)
itm2c itm2c,LOC107569273,LOC107698489,LOC107679406,LOC105018535,LOC107573001 coding downstream 67527 13349228 ~ 13358876 (+)
LOC103036611 gigyf2 coding downstream 117598 13399299 ~ 13429787 (+)
c17h2orf82 cunh2orf82 coding downstream 148827 13430528 ~ 13441256 (+)
trnap-agg_5 NA coding downstream 161140 13442841 ~ 13442912 (+)
trnai-aau_11 NA coding downstream 163095 13444796 ~ 13444869 (+)
G151504 NA non-coding upstream 67044 13214360 ~ 13214585 (+)
G151410 NA non-coding upstream 288031 12993364 ~ 12993598 (+)
G151377 NA non-coding upstream 468755 12777716 ~ 12812874 (+)
G151347 NA non-coding upstream 547362 12732022 ~ 12734267 (+)
G151302 NA non-coding upstream 674542 12544064 ~ 12607087 (+)
G151517 NA non-coding downstream 10630 13292331 ~ 13292685 (+)
G151518 NA non-coding downstream 12939 13294640 ~ 13296287 (+)
G151559 NA non-coding downstream 93475 13375176 ~ 13375562 (+)
G151561 LOC103036308 non-coding downstream 94666 13376367 ~ 13377974 (+)
G151565 NA non-coding downstream 101537 13383238 ~ 13383487 (+)
LOC107197015 NA other upstream 44892 13230102 ~ 13236737 (+)
LOC103033441 abhd8a,LOC108439870,LOC107696148,LOC107754588,LOC107687901,LOC107596234,LOC108280232,LOC103352801 other upstream 150176 13101394 ~ 13131453 (+)
LOC103033117 LOC108439884,LOC100333521,LOC107696163,LOC107750940 other upstream 172025 13103115 ~ 13109604 (+)
LOC103035375 LOC108427208,LOC108280686,LOC100331938,LOC107713688,LOC107600193,LOC107558294,LOC107729982 other upstream 1677588 11587909 ~ 11604041 (+)
LOC103037021 LOC103037021 other upstream 1720085 11552539 ~ 11561544 (+)
LOC103039742 LOC108439864,LOC108280459 other downstream 15893 13297594 ~ 13335076 (+)
G151621 NA other downstream 318908 13600609 ~ 13633602 (+)
G151634 NA other downstream 364979 13646680 ~ 13684847 (+)
pcp4 NA other downstream 476741 13758442 ~ 13762513 (+)
LOC103044755 LOC108443098 other downstream 638724 13920425 ~ 13943509 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) trnar-ccg_3 NA coding NC_047595.1 CM018541.1 32207625 ~ 32207697 (-)
mexican tetra (Astyanax mexicanus) trnar-ccg_3 NA coding NC_035913.1 CM008316.1 13279852 ~ 13279924 (+)