G82050


Basic Information

Item Value
gene id G82050
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 7348719 ~ 7352640 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU93379
ATTCAGTCGATCAAAGAGGTCGTCTCCTCCTTGCTTGTTTTCCATGAAAAGCTTGAGGTTTTTGTAAACCCTTTTGGCCACAGGAACCTTGTTGTAGTAGCGGATGCAATCTTTACCCAGAAAGTCGAACTCTACCACACACTTTTGCCCATCCAGTGTGTCGTGTAAAGTGATGTGCTCCACGCGTAGTGAGCAACAACCCACGGTGTCTGCCGTCTCACCCTCTTCCTTTTCATTACCTGCTCTCAGAGCCAGCTTGTCGATAAAGTAGAGGGCTACGGCTCTCTGGCGTGTGCCCATCTGTTTAGATTTGAGGTCCTCCTGGTACTGGGTTCGGATGGCATCCACACACGACTTTAGTCTACGAGCCACCTCATACTTTTCCCAATCCTTCTCACCCTACAGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU93379 True 408 lncRNA 0.50 3 7348719 7352640

Neighbor

gene id symbol gene type direction distance location
CI01000013_07286519_07288160 NA coding upstream 60172 7286442 ~ 7288547 (+)
CI01000013_07277014_07279249 NA coding upstream 69400 7276610 ~ 7279319 (+)
CI01000013_07154745_07159568 PECR coding upstream 189111 7154745 ~ 7159608 (+)
CI01000013_07148102_07150807 PDF coding upstream 197764 7148052 ~ 7150955 (+)
CI01000013_07131096_07141914 NA coding upstream 206677 7130952 ~ 7142042 (+)
CI01000013_07375912_07390782 MLYCD coding downstream 21178 7373818 ~ 7391003 (+)
CI01000013_07765924_07780475 NA coding downstream 412045 7764685 ~ 7780716 (+)
CI01000013_07791141_07802608 NA coding downstream 438064 7790704 ~ 7802710 (+)
CI01000013_07929832_07935997 GAN coding downstream 577192 7929832 ~ 7935997 (+)
CI01000013_07970614_07989626 CMIP coding downstream 617974 7970614 ~ 7989756 (+)
G82045 NA non-coding upstream 7968 7339729 ~ 7340751 (+)
G82017 NA non-coding upstream 72832 7275677 ~ 7275887 (+)
G82013 NA non-coding upstream 78883 7269617 ~ 7269836 (+)
G82010 NA non-coding upstream 81403 7267094 ~ 7267316 (+)
G81985 NA non-coding upstream 155733 7190949 ~ 7192986 (+)
G82061 NA non-coding downstream 56329 7408969 ~ 7409238 (+)
G82065 NA non-coding downstream 75177 7427817 ~ 7428019 (+)
G82069 NA non-coding downstream 89147 7441787 ~ 7442004 (+)
G82073 NA non-coding downstream 95648 7448288 ~ 7448564 (+)
G82076 NA non-coding downstream 110941 7463581 ~ 7464908 (+)
G81994 NA other upstream 10480 7335945 ~ 7338239 (+)
CI01000013_06076169_06080164 NA other upstream 1266352 6075400 ~ 6081684 (+)
CI01000013_06050285_06059640 NA other upstream 1289223 6049864 ~ 6060269 (+)
G80845 NA other upstream 2512487 4835078 ~ 4836232 (+)
CI01000013_04051081_04064651 NA other upstream 3282890 4050837 ~ 4065829 (+)
G82168 NA other downstream 675698 8028338 ~ 8041343 (+)
G82581 NA other downstream 1976689 9329329 ~ 9334948 (+)
G84005 NA other downstream 2248971 9601611 ~ 9602235 (+)
G84194 NA other downstream 2677968 10030608 ~ 10036953 (+)
G84215 NA other downstream 2723814 10076454 ~ 10079336 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G188525 NA non-coding CI01000041 null 776761 ~ 776980 (+)
mexican tetra (Astyanax mexicanus) G157920 zgc:173742,LOC108415671,LOC107684664,LOC107553995,LOC107749320,LOC108264272 non-coding NC_035914.1 CM008317.1 12741848 ~ 12758089 (+)